RNA id: XM_043253686.1


Basic Information

Item Value
RNA id XM_043253686.1
length 3444
RNA type mRNA
GC content 0.38
exon number 13
gene id pelo
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5360364 ~ 5367143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAATGACGCGATCAGAAAGCGACAGTTCGAATCGTCTGATTCATTCTAAAGTGGCAGAATGTGCCACTGCTGATGCGGAAAcgtcatcaaaattaaattgaatagtacacaattaaatatgcattttgtttttgaatagcTAAGCCCTTTGACCATGAAGTTGGTTCATAAAGACATCGAGAAGGATAATGCCGGtcAGGTGACACTAATACCTGATGAAGCAGAGGATATGTGGCACACCTACAACCTACTGCAGGTGGGCGACAGCCTTAGAGCCTCAACCATCagGAAAGTGCAGACAGAGTCCTCTACAGGCAGTGTGGGCAGCTCACGTGTGCGCACCACACTGACTTTATGCGTGGAGACGATAGACTTCGATTCCCAGGCATGTCAGCTCAGAGTCAAAGGGACAAATATCCAGGAGAACCAGTATGTGAAGATGGGTGCCTATCATACCATTGAACTGGAGCTCAACAGGAAGTTCACTCTTGCCAAAAAAGTCTGGGACAGCGTGGTGTTGGACAGAATTGAGCAGGCATGTGACCCCGCTCAGAAAGCAGATGTGGCTGCTGTTGTGATGCAGGAAGGTCTGGCCAATCTAGTTCTCGTGACTCCAGCCATGACCTTGCTAAGGGCAAAGGTTGAGGTCACCATCCCCCGTAAGAGAAAAGGCAGTTGCACTCAACATGACAAGGCATTAGAGAGATTTTATGAGGCTGTCATGCAGGGCATTCTTAGGCACTTCAATTTTGATGtggtGAAATGTATACTGGTGGCCAGTCCTGGATTTGTGAAAGATCAGTTTATCTCGTACCTGTTTAAAGAGGCTGTGAGGCAAGACTGTAAAATACTACTGGAGAACAGGCCCAAATTCATGGTGGTGCACTCCTCATCTGGACACAAGTATTCACTCAAAGAAGTGCTGTGTGATCCAGCAGTCACGGCCCGGTTGTCTGACACCAAGgcAGCTGGAGAGGTTAAGGCTTTGGAAGACTTTTACAAGATGCTTCAACAGGAGCCTGATCGAGCTTTCTATGGACTGGCTCATGTGGAAAGAGCGAGTGAAGCTTTAGCCGTTGACATCCTGCTCATCAGTGACAAACTATTTagACATCAAGACATAGCCACTCGTAGCCGATATGTTCGGCTTGTGGACAACGTGAAGGAAAATGGAGGAAATGTCAGaatattCTCAAGCCTTCACGTATCTGGAGAACAGCTGAATCAGTTGAGTGGAGTGGCGGCCATCTTGAGGTTCCCCATTGCTGACATGTCTGAAGCTGAGGACGACAGCAGCACTGATGAAGACTAACGTTAAGCAGTCATGCAAAAGGATTTGGTATGAAAGACCAGAAATTCTTCAGTTAGGACTACATGGAATGAGACTCTATGGCCTTTAATAAAGGATTTGAAATCAGTTGAAACATCATAAAACACTGggataattatgatttattatctTCAGAGCTCTGAAGAATGGCAAAAAGTATTGAAAGTCATTACTTTATTAATCCCGTATGCAAAGTGGGTTTTCTGCGTTCattgaaacaacatttatttgtaaataattgcaaattaatttagAGTTTTAAGGCATTACAGAGCTGTGGATGATTTGCATGGATTTGGACACAGGTACTTAAACTGCAACGCATCCTTGCAATGCACCCTTTTCAGAGAAGAGCAtttgcaaatgaaaaacaaaccaaattaAGGAAGAAAATGTGCAGGTTTCTATAACAAACACTCCCCCCAACGAGCCAGGTTTGAAAACTGTGaaagttcaaatgtttttctaaaacaCCCATTTGTTCCAATTTTTGAAATTCATTGTCAGAGTAGATTGGAGCGTATTTAGAAATTGCTATGCATATTTAACCAATCATCAGCGTCACAGTTTGTTACACAAAAAATAGTTACAGGTGCAAAACATAAACACTTATGCTATGAAATCTATTTACAATATCACACACATTTTAGTCTCCAGTAGCAATACAAATATAAGTTACCTAGCCATGCAGGAGCAGCTTCCAGACAATATGTATCTTAgatttaaagtagctgttttgtTGACAGTGAACCATGTTTTATAGTGTATTCCGGTCATTTAGAAaagattgttttttaaaaaaaaaaattttaatgcaCGTAAATGGCACCACAAAGCCCAGCGTTTTCAAGTTGGGGGGCATGTTggtaaaaaatacaatagatGCAGAATCTATATTAACTAGTTATTTCATTTACGAAAAAAATAGCAAAGGTGCATGTACAAAATATGATTGTACTGTGCAATTAcaatagaatatataatattcagtttacagcaatttataatttaacaaaaccataaagcaaaaatacacCCGACGTGCATTCCGCAGTCAGCATTTTGTAGaagtagatttaaaaaaaaaaaaaaatcttgtgtaaatatttttttgttttaagtagaTAAGGTTTATTGCTATATTAAACTGACCGAAGTGGAGTGTTTTCACTTGACATCGGAATTGCAACTTTGCCAGTTCCTTAATATCAACTTCCCAGGAGGACACACACATCATTACACATCACTGTCACGGCAGTAGCTCTGATCACAAATGTTGAAATGACATCTCCCtcaaaagaatatatttgtataatctATACACGTAGTTGCTTTTTCACTACAGGAGCATGCTATAACAGTACAGACAGAGGACACAGAACATACTTTCTAGTGGCCATGTGTCAACAGTGGTTTAGGAGTATACTTTTTAAAAGGCTGTGCATTTGGCTGTactttaacatttgtatttaactATACTTAAACTAGGCTTAAAGTGAATACTACATTAAGTCATTTCTAATAACATCCATAAATTAACACTAAACCTCAAATTAAATCTGAATTCAGTCATGTTtactaaacataaaatatttgtgtaccTCTCACTCAGATTAAAATCTTGGTCTGACAGACGTCTCTTCTTTTTAGGAATGTGTAAGTAGTCATTTGtgcttctttaaaaatgactgcGTATGTTGATATGTTATGATTATagctcatttttcattttatgcacATGCCAGGACGGTAAATTTGAATGTCAGCCTCCTGTAAAACTGTCACCACTGTGAATCGAAGATGTGTCTGGGTAGCCAAATGGTTAAAGGAGCACTTACTCCAATCTCTAGATATAGCTCGGGGacaactttttgttttaataattttacaaaattttattttcgtttttttttcaatgtgttGTCAGATTTGACAgtgttgaaaatgttaaatatcaaTGCATACTCTTAAATGGAAACTGATTTCTCCAATTGTGCTTTGATAGTATAACAACAAGTCCAGCTTGTTTAATTCAAGTAATATTTTATGCTCATATACAATTCATATTTGACATATGTAGCACCAtgtaaataaagcacatttgttAACAGTA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K06965 PELO, DOM34, pelA; protein pelota

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126767 lncRNA downstream 907088 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 947002 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 948164 4411340 ~ 4412200 (-) True G85569
TU126745 lncRNA downstream 1047316 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 1048460 4311453 ~ 4311904 (-) True G85551
TU127055 lncRNA upstream 55941 5423084 ~ 5426127 (-) False lsm5
TU127056 lncRNA upstream 55941 5423084 ~ 5426511 (-) False lsm5
TU127129 lncRNA upstream 360161 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 443514 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 453206 5820349 ~ 5821178 (-) True G85891
XM_043253841.1 mRNA downstream 30131 5280381 ~ 5330233 (-) False ccser2b
XM_043253843.1 mRNA downstream 30131 5280381 ~ 5330233 (-) False ccser2b
XM_043253842.1 mRNA downstream 30131 5280381 ~ 5330233 (-) False ccser2b
XM_043253844.1 mRNA downstream 30131 5280381 ~ 5330233 (-) True ccser2b
XM_043253845.1 mRNA downstream 30131 5285260 ~ 5330233 (-) False ccser2b
XM_043253097.1 mRNA upstream 48756 5415899 ~ 5419866 (-) True emc9
XM_043254308.1 mRNA upstream 56360 5423503 ~ 5425993 (-) False lsm5
XM_043254413.1 mRNA upstream 110379 5477522 ~ 5486280 (-) True ghdc
XM_043253798.1 mRNA upstream 120657 5487800 ~ 5504829 (-) False stat5b
XM_043253797.1 mRNA upstream 120657 5487800 ~ 5504829 (-) True stat5b
unassigned_transcript_1919 other downstream 963871 4396412 ~ 4396493 (-) True trnal-uag_71
unassigned_transcript_1918 other downstream 967209 4393074 ~ 4393155 (-) True trnal-aag_72
unassigned_transcript_1917 other downstream 968528 4391754 ~ 4391836 (-) True trnal-uag_70
unassigned_transcript_1916 other downstream 970677 4389600 ~ 4389687 (-) True trnal-aag_71
unassigned_transcript_1915 other downstream 970836 4389446 ~ 4389528 (-) True trnal-uag_69
TU127020 other upstream 23465 5390608 ~ 5396912 (-) False G85779
TU127052 other upstream 55941 5423084 ~ 5426511 (-) False lsm5
TU127053 other upstream 55941 5423084 ~ 5426127 (-) True lsm5
TU127203 other upstream 617846 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 623770 5990913 ~ 6007107 (-) True G85930

Expression Profile