RNA id: XM_043253692.1


Basic Information

Item Value
RNA id XM_043253692.1
length 3451
RNA type mRNA
GC content 0.50
exon number 23
gene id atp2a1l
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5382602 ~ 5396512 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGAATTTATTCGCTCTTTCTGTCAGTCCATCACTCCTGTGAGGAGGGGGTCCAAGTAACGGGGGGCAGATTTTGTAATACAGAGAGCAACAAGAGGATAGACCTGTTTAATTAAGCTTTTGCCACTCTTGAAGATCCTTCACCCCTGACAGGATGGAGGACGCCCATACCAAGGCCCCGGCCGAATGTCTGTCCTACTTCACAGTTAGTGAAACCACAGGTCTTTCCCCGGATCAGGTCAAGAAGAACCTGGCTAAGTACGGCTTCAATGAGCTGCCAGCTGAGGAGGGAAAATCCATCTGGGAACTGATCATTGAGCAGTTTGAAGATCTGTTGGTCAGAATTTTGCTGCTTGCTGCCTGCATCTCTTTCGTCCTGGCCTGGTTTGAGGAAGGTGAAGAGACCGTCACTGCCTTTGTTGAGCCTTTTGTCATTTTGCTTATTCTCATTGCCAATGCCGTCGTCGGTGTGTGGCAGGAGCGTAATGCTGAGAGCGCCATTGAGGCTCTGAAGGAGTATGAGCCTGAGATGGGTAAGGTCTACCGTTCTGACAGAAAGAGCGTCCAGAGGATCAAGGCCAGAGAGATTGTCCCCGGTGACATCGTAGAGGTGTCTGTTGGTGACAAAGTTCCTGCTGACATCAGGATTACTGCTATTCGTTCCACCACCCTTCGTGTTGACCAGTCCATCCTGACTGGTGAGTCCGTCAGTGTGATCAAGCACACTGAGCCTGTCCCCGACCCTAGAGCTGTCAATCAGGACAAAAAGAACATGCTTTTCTCTGGCACAAACATTGCTGCTGGCAAGGCTATTGGAGTTGCTGTTGCTACTGGTGTAACCACTGAAATTGGTAAGATCCGTGACCAGATGGCCGCCACAGAGCAGGAGAAGACCCCCCTGCAGCAGAAACTGGATGAGTTTGGTGAGCAGCTCTCTAAGGTTATCTCTCTGATCTGCGTCGCTGTCTGGATGATCAACATCGGCCACTTCAACGACCCCGTCCATGGTGGATCCTGGATCCGTGGCGCTGTCTACTACTTTAAGATCGCTGTTGCTCTGGCTGTAGCTGCTATCCCTGAGGGTCTGCCTGCTGTCATCACTACCTGTCTGGCCCTTGGTACCAGACGTATGGCCAAGAAAAACGCCATTGTCCGTTCACTGCCTTCTGTGGAGACCCTGGGCTGTACTTCTGTCATCTGCTCCGACAAGACTGGCACCCTGACCACCAATCAGATGTGTGTGACCAAAATGTTCATCATTGATAGAGTTGATGGTGATCACGTTGAACTTGACTCCTTTGATATCTCTGGCTCCAAGTACACACCCGAGGGTGAGGTCACAAAGTTGGGTGCTCGTGTTGACTGCGGTCAGTATGACGGTTTAGTTGAGTTGGCCACCATCTGTGCCCTGTGCAACGATTCCTCCCTTGACTACAATGAGTCCAAGAAGATCTATGAGAAGGTCGGTGAGGCCACTGAAACCGCTTTGTGCTGCTTGGTTGAGAAGATGAATGTTTTTAAGACCAATGTCAACAGCCTGTCCAAGATTGAGAGAGCAAATGCCTGCTGTAGTGTTGTGAAGCAGCTAATGAAGAAGAATTTCACTCTGGAGTTCTCCCGTGATAGGAAATCCATGTCTGTGTACTGTACCCCTACCAAGGGTGATGCAGGCAGCAAAATGTTTGTGAAGGGCGCTCCAGAGGGTGTGATTGACAGGTGTTCCTATGTGCGTGTTGGTTCCACTCGCGTACCCCTGACTGGCCTTGTTAAAGATAAGATCATGTCCGTCATCAAGGAGTGGGGTACTGGCCGTGACACTCTGCGTTGCCTGGCACTTGCCACCCGTGACAATCCCCTGAAGGTTGAAGAAATGAACCTTGAGGACTCTACTAAATTTGCTGACTATGAGACTGACTTGACCTTCGTTGGCTGTGTCGGTATGTTGGATCCCCCCCGTAAAGAGGTTACTGGCTCCATTGAACTGTGCAGGGCTGCTGGCATTCGTGTTATCATGATCACTGGTGACAACAAGGGCACAGCTGTGGCCATCTGCCGTCGTATTGGCATCTTTTCTGAGGATGAGGATGTAACTGGCAAAGCTTATACCGGCAGAGAGTTTGATGACCTGCCCCGCGGTGAACAGAGCGAAGCTGTCTGCAAGGCATGCTGCTTTGCCCGTGTTGAGCCCTCCCACAAGTCTAAGATCGTTGAGTTCCTGCAGGGCTATGATGAGATTACTGCTATGACTGGTGATGGTGTCAACGATGCCCCTGCCTTGAAAAAGGCAGAAATTGGCATTGCCATGGGCTCTGGCACTGCCGTTGCCAAGTCAGCCTCTGAGATGGTCCTGGCCGATGACAACTTCTCTTCTATTGTGGCTGCCGTTGAGGAAGGCAGAGCCATTTACAACAACATGAAGCAGTTCATCCGTTACCTGATTTCTTCAAATGTTGGGGAGGTCGTCTGTATTTTCCTGACTGCTGCCCTGGGTCTGCCTGAGGCTCTGATCCCAGTCCAGCTGCTGTGGGTGAACTTGGTGACTGATGGTCTGCCTGCCACTGCCCTGGGCTTCAACCCCCCTGATCTTGATATCATGGGCAAGCCTCCCCGCTCTGCCAAAGAACCCCTGATCTCTGGCTGGCTGTTCTTCAGATACATGGCCATTGGTGGTTATGTGGGTGCTGCTACTGTGGCTGCCGCTGCTTACTGGTTCGTGTATGATGAGGAGGGTCCCGGGATCACCTACTACCAGCTGTCTCACTTCATGCAGTGCCATGAGGAAAATGAGGACTTCACTGGCGTTGAATGTGAGGTGTTTGAGGCTGCTCCACCCATGACCATGGCCCTGTCTGTCCTGGTCACAATTGAGATGTTCAACGCTCTCAACAgCTTGTCTGAGAATCAGTCCCTGTTGCGCATGCCACCATGGAGCAATTGCTGGCTAGTGGCTGCCATGACCCTCTCCATGTCCCTCCACTTCATGATCATCTATGTGGACCCCCTGCCCATGATTTTCAAACTAACTCACTTGAACACAGAACAGTGGATGGTGGTACTGAAGCTTTCTTTCCCCGTCATCCTCATTGATGAGGTGCTGAAGTTTGTTGCCCGCAACTACCTGGAGCCTAAAGCATGAAATGTAGAGACAACAACGTGGGAGTGAAAAAACAGGagataaaaaagaagaatacaACAAGAGAATGAATGAGGaagaatggaagaagagagaatTTACATCAGCTGAGACAGAAGCTCTCATGAGCCCATCTGCAGAATGGAGAGCACAAAATctttggaaaatataaaaaataacagaaaaactaaaaaatactaAGTTTAGTGACAGAGATGAATATATAGGTCAGCCCTTCCAAATTAGTGTTTGAATGCTGAATTGTTTTGTTCCTAAATGGACTAATAAgtgtattaaacattttttgttaaaattgta

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252214.1 lncRNA upstream 224870 5154654 ~ 5157732 (+) True LOC122355395
XR_006252213.1 lncRNA upstream 238224 5142900 ~ 5144378 (+) True LOC122355394
XR_006252212.1 lncRNA upstream 238224 5142900 ~ 5144378 (+) False LOC122355394
TU126782 lncRNA upstream 284898 5085661 ~ 5097704 (+) False LOC122355392
TU126744 lncRNA upstream 1069572 4312579 ~ 4313030 (+) True G85552
TU126873 lncRNA downstream 1051 5397563 ~ 5402712 (+) True G85661
TU126891 lncRNA downstream 48895 5445407 ~ 5446719 (+) False drosha
TU126902 lncRNA downstream 87062 5483574 ~ 5485749 (+) True G85683
TU126904 lncRNA downstream 95202 5491714 ~ 5492934 (+) True G85685
TU126906 lncRNA downstream 98595 5495107 ~ 5496234 (+) True G85687
XM_043253687.1 mRNA upstream 9617 5367524 ~ 5372985 (+) True ppp1cab
XM_043254383.1 mRNA upstream 22748 5356354 ~ 5359854 (+) True paqr4b
XM_043254342.1 mRNA upstream 27060 5341103 ~ 5355542 (+) True cmn
XM_043253170.1 mRNA upstream 44680 5332180 ~ 5337922 (+) True patl2
XM_043253613.1 mRNA upstream 150119 5184018 ~ 5232483 (+) False LOC122355390
XM_043254199.1 mRNA downstream 9043 5405555 ~ 5412438 (+) True irf9
XM_043254307.1 mRNA downstream 24194 5420706 ~ 5423417 (+) True psme2
XM_043254292.1 mRNA downstream 30069 5426581 ~ 5446687 (+) True drosha
XM_043254437.1 mRNA downstream 56317 5452829 ~ 5476664 (+) True kcnh4b
XM_043254357.1 mRNA downstream 114186 5510698 ~ 5532907 (+) True oplah
TU126784 other upstream 292964 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 929327 4452855 ~ 4453275 (+) True G85567
TU126759 other upstream 963389 4418247 ~ 4419213 (+) True LOC122355720
TU126747 other upstream 978922 4401131 ~ 4403680 (+) False LOC122355090
TU126733 other upstream 1105217 4275344 ~ 4277385 (+) True ndufa4b
XR_006252205.1 other downstream 490440 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other downstream 490440 5886952 ~ 5943580 (+) False becn1
TU127259 other downstream 699436 6095948 ~ 6096732 (+) True G85962
TU127298 other downstream 818407 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 1044309 6440821 ~ 6441526 (+) True G86019

Expression Profile