RNA id: XM_043253698.1


Basic Information

Item Value
RNA id XM_043253698.1
length 2773
RNA type mRNA
GC content 0.39
exon number 6
gene id pigf
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11006964 ~ 11013659 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATTATGCTTTGTTTAGTTGGTTCCATCTACCGGAAGCACACGGCagtcatgttttgtaaataaactgttcgatttttaaatttgtagtCTTATGGCATTCGGTTTAGAAGGGGTACGATcgtaatttgtacatatttaagtGCTCGATGAATCTGTTAATGTAACGTTATTAGTTTAGGAATTTATATTGGTGGATATAAACTTTAACCAGGCACCTCACTCCATTGGTACCGCCATTTAACCTCCATAATGTGGGATGTTGAGATCAGGGGCATGGCATCGGCTCATGCCATTATTGCCTCCTCCATCTTCATGGCAACCGTGATGCCTGCTGTCTTCGTGGAAAACTTCTCTGTTTATGGGACCCACATGATTTGGCTGTATTGTGTAGCTGGATCTATTGCTGTGGTCAACATCGCAGTTTTTTGGCTTCTTGGCATCAGCCCGCCAGCAAAGAAGAACACACTGACCTACAAGATCAACAGATTGTTAAAATCATGTCTGCACTTTCTTCTGTCATGCCTTTTTTTTCACACCGTGGTGGTACTCTACGGAGCACCTTTgcttgaGTCAGCTCTGGAGACGTTTTCTCTGGCCGTGCTGCTGTCCACGCTCACCACATTGAGATGTCTCTGTATCCTGGGTCCTAATGTACAGGCATGGATCCGAGTTTTCAGCAGAGATGGGGCGATGTCAGTGTGGGACACGTCTCTTCAGATTACCACAGGCTGTAGTGTGATTGGGGCCTGGCTGGGAGCTTTCCCTATTCCTCTCGACTGGGACAGACCCTGGCAGATGTCTAGACGAGACCGATTCATTACTGGAGAGAGGGGAAGCTGTAGGGAGGCAGTGATTCCTCCACACGTGATGATGGGAGCGTGAACTCTGGGGTGGTTCAATCCTGATGTCTAGCTTTAGAGAGTGGACGAGCCGTGTGACTCACACACAGATTCTCTCCTCCTCATTGCCATGACACTCTTGTAATATTGCAGCCCGTATTATGGTCTTGAGATAACTGGATAATCAATTCTGAGACCCAAATCAAGTATGAAGCGAAGAAATCTTATTCTctgtataaaacaaacagaaatgagTGCTGATCGTTATGTATTAGCCTATATTCAAAAATTTAGGGtcattaatagtttttttttatttaaaaaatgataattttatttagaaaggtTGCATGGCATTGATCAAATCCGGTAAGTACATAATATTGAACCTTCTTTACATCAAATAATCTACACACAAAAAGCAATGATAAGAAATCAGCATTTTAGTATTGtcaccacaggaataaattaaatttcagaTACAAAATCTTTAAATTACTGCAGTAATATTAGtgttttaccgtattttttattaaataaaattttatgcGCTTGCTTGGTAAGCACATAACATTTCTATCAAAACATTCTTTAAGACCCCAAAATTTTGAATGGTagccttatttttttttgtgtgtctgtcatatttcttaatatataaaaagaatttAATATGTATGTGCAACACTGAAATAAGGCATTCAAATCTATATAAAGAAGCAACGCGACTAAAAAAAggcaacatttttgaaaaacctGTTTTATACTCATTAAAGATCTTGAGGCAAGtcattaaaatttacatttttgtttatctaCTGCGGATTGGGCATCATCAGCAagttttcatattaattatgttCTTCCACAAAACCATTGTGCCTTTCAATTTTTAGATTTGCATTccatatatttactatttataaaggctttttttttttttttgtagttgttgcTCACAATGTGCTGGAAGCTTTAAAAGACCACTCAGACCACTCCACATATTTGCATGGACTGCgagaaattcataaaaaaaataaaaataaaaattgaataaaattttaaaatcaccTTGATATGAAGcaaaaattcaaaatgcaaaGCAGTCGGCACACACCTGAGAGGCAAGGCCACCAATACATAACACTCAAAACTCTacgttaaaaaaagaaagaggaataAAGCAGTCTCAAATAGAAAATTTGGTTGGTAAAACACCACAGTGAGTCAGTCAGCAGTAAGTCACTTGTGCTCCTGCAAAATGACAGTTTcgatcttcattttttttttttggctcttgTATCCAGGTTTGGCCCATCTCCTGTACGCTTGGGGCAACTACTGGATTTCTGACCGGCCTCCTCGCTGCTCCTGTCTGGATCCACTGGCATCGCAAACAACTCACCTACAAGCTCAAGTGAGGAAGAGAAGGACACGATCACAGGCCACCAGgaactgagagagaaagagatccAGGCTGGAGTCCACCCATTACGTGCTCTAAAAAATCTCAGAGGTCCCatttacaacaataaaaaaaccttttgtttctttgtttttctttttttttttttgtagagtaGATATTCGATTTGTTGTATGCTCCTAATGGCAGTATATTTATTCGATCGTTCCTCTCGTTCTTCCTGTAAATAAAGCCAGCGCTGACTTGAGACATTTTGTAAAAGGCAAATGTTTTGCAACCCAAACTGAGATTCTGAGTTTCCCTTTTTGAAGAAAGTCTTACTTCTGTAAATGGCCGACGGGTTTGGTTGTGCTGTTTAGGCTTGTCTACATCTCTCAGACGAACTCATGCATGCTGAGCCAGACATGGAAATACAGTTcgaattttttgtttttagtcacTGGAAAGGTTGTCCGTTCTCTGTGCTTGTATGTTCAATAAATCATCGTTGTCGGGTTTTCTTTGTA

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004307 ethanolaminephosphotransferase activity molecular_function

KEGG:

id description
K05287 PIGF; GPI ethanolamine phosphate transferase 2/3 subunit F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129065 lncRNA upstream 10126 10996730 ~ 10996994 (+) True G87210
TU129060 lncRNA upstream 19410 10981278 ~ 10987710 (+) True G87207
XR_006252189.1 lncRNA upstream 51325 10954658 ~ 10955795 (+) True LOC122355200
TU129005 lncRNA upstream 67291 10918779 ~ 10939829 (+) False LOC122355308
XR_006252208.1 lncRNA upstream 88011 10916186 ~ 10919109 (+) True LOC122355308
TU129085 lncRNA downstream 27009 11040668 ~ 11040906 (+) True G87222
TU129083 lncRNA downstream 68541 11082200 ~ 11089057 (+) True G87220
XR_006252223.1 lncRNA downstream 69739 11083398 ~ 11089158 (+) True LOC122355479
XR_006252230.1 lncRNA downstream 109264 11122923 ~ 11130890 (+) True LOC122355611
TU129121 lncRNA downstream 211106 11224765 ~ 11227915 (+) True G87238
XM_043253253.1 mRNA upstream 2178 11000854 ~ 11004942 (+) True gch2
XM_043254204.1 mRNA upstream 58079 10944753 ~ 10949041 (+) True calm2b
XM_043253167.1 mRNA upstream 109840 10888133 ~ 10897280 (+) True fshr
XM_043253737.1 mRNA upstream 142675 10818424 ~ 10864445 (+) False nrxn1a
XM_043253863.1 mRNA downstream 42035 11055694 ~ 11082276 (+) True mta3
XM_043253864.1 mRNA downstream 42035 11055694 ~ 11082276 (+) False mta3
XM_043253865.1 mRNA downstream 42036 11055695 ~ 11081334 (+) False mta3
XM_043253866.1 mRNA downstream 42036 11055695 ~ 11081298 (+) False mta3
XM_043253868.1 mRNA downstream 42036 11055695 ~ 11081298 (+) False mta3
XR_006252209.1 other upstream 425365 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 427124 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 515948 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 519779 10481615 ~ 10487341 (+) False LOC122355192
TU128819 other upstream 1133225 9871664 ~ 9873895 (+) False LOC122355252
unassigned_transcript_1922 other downstream 70618 11084277 ~ 11084370 (+) True trnai-uau_3
TU129235 other downstream 681185 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 923183 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 1719105 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 1746715 12760374 ~ 12762273 (+) False gall

Expression Profile