RNA id: XM_043253699.1


Basic Information

Item Value
RNA id XM_043253699.1
length 2363
RNA type mRNA
GC content 0.45
exon number 5
gene id rhoq
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11012472 ~ 11027430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAATCCGTGTTGGGCTCAAGAGTCAGAGGAGGTGATACCGGGGTTGGAAAGTAGGGAAAGTGGGACAGCGGTGAGGGCGTAGGGTGTTGAGCACGCGGCTTTTAGGTTGTCGTCTTGACGACGCAAAGTTTGTCGCTCGCTCCCGTCTCGTCAGAAGCGGCACGCGCTCGGCGTGTGCCAGTGTTGAGAGGGGAAAACCTCAGTCAGTGGCAAATTTGGGAAACGGGGTGGAGGAAATGgcatttcagctgtttttgctGCCCGAGCGcggcgctgctgctgctggtggaGGTGACGCCTGAAGGGAGCTTTACTAACGAGGGATATATCTCTGATAGCTGAAGATGGTGAATTCAAGTGTTTTATTATCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGCGACGGCGCCGTTGGAAAAACTTGTCTGTTGATGAGCTATGCCAACGACGCGTTTCCAGAGGAATATGTGCCCACTGTCTTTGATCATTATGCAGtgagtgTGACGGTTGGGGGAAAACAGTACCTGCTGGGGCTGTATGACACTGCGGGTCAGGAGGACTACGATCGCCTGCGACCCCTGTCCTACCCCATGACAGATGTCTTCCTCATTTGCTTCTCCGTGGTGAATCCGGCCAGCTTCCAGAACGTGAGAGAGGAGTGGGTCCCTGAGCTGCAGGAGTACGCACCCAACGTCCCTTACTTGCTCATTGGCACTCAGATTGACCTGCGGGACGACCCCAAGACTATTGCCAAGCTGAACGACGTGAAGGAGAAGCCCATTGCGACAGAACAAGGCCAAAAGCTAGCAAAGGAGATTGGTGCCTGCTGTTATGTTGAATGTTCAGCACTGACACAGAAAGGCCTGAAGACTGTGTTCGATGAGGCTATTATAGCCATTCTGGCTCCTAAGAAAGGTGCGCTCAAGCGAAGACTGGGCCCACGCTGCATCAACTGCTGCCTCATCACATGATACACCAGCTCAAGGGCATCCAGTGAACCAACGGTGACCAACTGACAAACAACCAGATTTCAATCTGACTTCTGAACTAAAGCAATGGGCCCAGGCACCTACAAGTCCAAGTTATGGGCGAACGACAAGAGGAACTGACAAAAAAGACATATTGTTGAGGGAGAAATTAATATTGGGAATGGAATACAAAGAAAACCCGACAACGATGATTTATTGAACATACAAGCACAGAGAACGGACAACCTTTCCAgtgactaaaaacaaaaaattcgAACTGTATTTCCATGTCTGGCTCAGCATGCATGAGTTCGTCTGAGAGATGTAGACAAGCCTAAACAGCACAACCAAACCCGTCGGCCATTTACAGAAGTAAGACTTTCTTCAAAAAGGGAAACTCAGAATCTCAGTTTGGGTTGCAAAACATTTGCCTTTTACAAAATGTCTCAAGTCAGCGCTGGCTTTATTTACAGGAAGAACGAGAGGAACGATCGAATAAATATACTGCCATTAGGAGCATACAACAAATCGAATATCtactctacaaaaaaaaaaaaagaaaaacaaagaaacaaaaggtttttttattgttgtaaatGGGACCTCTGAGATTTTTTAGAGCACGTAATGGGTGGACTCCAGCCTggatctctttctctctcagttcCTGGTGGCCTGTGATCGTGTCCTTCTCTTCCTCACTTGAGCTTGTAGGTGAGTTGTTTGCGATGCCAGTGGATCCAGACAGGAGCAGCGAGGAGGCCGGTCAGAAATCCAGTAGTTGCCCCAAGCGTACAGGAGATGGGCCAAACCTGGATAcaagagccaaaaaaaaaaaatgaagatcgAAACTGTCATTTTGCAGGAGCACAAGTGACTTACTGCTGACTGACTCACTGTGGTGTTTTACCAACCAAATTTTCTATTTGAGACTGCTTtattcctctttctttttttaacgtAGAGTTTTGAGTGTTATGTATTGGTGGCCTTGCCTCTCAGGTGTGTGCCGACTGCtttgcattttgaatttttgCTTCATATCAAggtgattttaaaattttattcaatttttatttttattttttttatgaatttctcGCAGTCCATGCAAATATGTGGAGTGGTCTGAGTGGTCTTTTAAAGCTTCCAGCACATTGTGAgcaacaactacaaaaaaaaaaaaaaagcctttataaatagtaaatatatggAATGCAAATCTAAAAATTGAAAGGCACAATGGTTTTGTGGAAGaacataattaatatgaaaactTGCTGATGATGCCCAATCCGCAGtagataaacaaaaatgtaaattttaatgaCTTGCCTCAAGATCTTTAATGAGTATAAAACaggtttttcaaaaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07194 RHOQ, TC10; Ras homolog gene family, member Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129382 lncRNA downstream 5534 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 116325 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 117755 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 147876 10816561 ~ 10864596 (-) False G87376
TU129316 lncRNA downstream 147876 10817958 ~ 10864596 (-) True G87376
TU129386 lncRNA upstream 43819 11071249 ~ 11071765 (-) True G87429
TU129411 lncRNA upstream 81466 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA upstream 97017 11124447 ~ 11126279 (-) True G87450
TU129359 lncRNA upstream 231587 11259017 ~ 11298534 (-) True G87409
TU129455 lncRNA upstream 244311 11271741 ~ 11273302 (-) True G87482
XM_043253701.1 mRNA downstream 5518 11005006 ~ 11006954 (-) True cript
XM_043253850.1 mRNA downstream 15891 10985042 ~ 10996581 (-) False socs5a
XM_043253848.1 mRNA downstream 16565 10985042 ~ 10995907 (-) False socs5a
XM_043253847.1 mRNA downstream 16566 10985042 ~ 10995906 (-) True socs5a
XM_043254470.1 mRNA downstream 74459 10931862 ~ 10938013 (-) True msh2
XM_043254163.1 mRNA upstream 16846 11044276 ~ 11045889 (-) False LOC122355648
XM_043254162.1 mRNA upstream 22249 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA upstream 22249 11049679 ~ 11054805 (-) False kcng3
XM_043253869.1 mRNA upstream 54775 11082205 ~ 11084036 (-) True hcar1-4
XM_043254109.1 mRNA upstream 91988 11119418 ~ 11122838 (-) True zfp36l2
XR_006252200.1 other downstream 1523160 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1523160 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1523182 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 1523182 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 2134360 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 15458 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 293993 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 805449 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 921841 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1621953 12649383 ~ 12675472 (-) False prr15lb

Expression Profile