RNA id: XM_043253703.1


Basic Information

Item Value
RNA id XM_043253703.1
length 3950
RNA type mRNA
GC content 0.49
exon number 19
gene id arhgap17a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8155233 ~ 8179107 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCGCTTATCCGagctgtgacacacacacacacacactcactcactcactcagtaCCGACACGGACGCAGTGATCATCCCGCTGCCATGCACTTCCACTCTCTCCCGTAGATGTCACGGGCTGGCATACGTGGAAACACCGCTCACTCCCGCTTATGAGCGCAGTTGCAACACGGAATGACATGAAACGAGCACCGCTATTCACCGGAGCTAACTTTTTCcacactgctgtttttttttctcccgaTCGGCTAGTTTTCTAGCCGCTCGAGCTAACCGTGCACCGGGgctgttttaatgtaattatccACACGACTTCACCATCGTGCTCAAGGATCTTTCGGCTCATGAGGCATCGACGAACGCGCTCTCATCGTCTTAAAAACTGGGTTTTGAGGCCGACGCCACTAAAATGAAGAAACAGTTCAATCGGATGAGACAGCTCGCCAATCAAACAGTTGGCAGAGCGGAGAAAACAGAGGTCCTTAGCGATGACCTGTTACAGATTGAGCGGCGTATGGAGTTGGTGCGAGTCGTTTCTCACAACACGCACAAAAGAATGGTGGCGTGTGTGCAGGGGCAGATAGGCACTGAAGCTGAGAAGAGACATAAAAAGCTTCCGCTGACAGCGCTGTCACAGGCCATGCAGGATGGCGGAAACCAGTTGGGGGAGGAGTCTCTGATTGGGAAAATGATGGAGATGTGCGGAGATGCCGAGAACAGACTGGCCTCTGAACTAATGCAGCATGAAATGAACATTGAAAAGGAAATCCTAGACCCCCTCAATCAGCTAGCGGAGGTGGACATTCCTAACATCCTGAAACAGAGGCGGCAGTTAGCCAAGCTGGTGCTGGACTATGACTCTGCCCGAGCAAGGTGGTTGCAGGCGACCAAGTCCATAATCTCAGGAACAAACACGCAAGCACTGACAGCCAAAGCAGATTCGCTTAAAGAAGAAGTCGATGAAGCTATGAACAAAATGGAGCTGTGTAAGGATCAACTTTCAGCAGACATGTACAATTTCTTCTCAAAGGAGGCAGACTATGCCCGCTACTATGTAATGTTATTAGAGGCACAAGCAGATTATCACCGAAAATCTCTCACCTTGCTCGAGAGCGTCCTGCCAACCATTCAAGCTCAACAAGATTCGTGGACTGAGAAGCCAGCGTTTGGGACTGCTCTGGACGAGCACCTGAAGCGCAGTAGCAGAGAGATCGCTCTGCCCATAGAGGCCTGCGTCATGATGCTGCTGGAGACTGGAATGAAAGAGGAGGGTCTTTTCAGAATAGCCGCAGGAGCCTCGAAGCTGAAGAAGCTGAAGGCAGCTCTGGATTGCTCCACCTCGCAGCTGGAGGAGTTTTACTCCGACCCGCATGCCGTCGCTGGGGCATTAAAGTCGTATCTCAGAGAGTTGCCTGAACCTTTAATGTCTTACCAGTTGTATGATGAGTGGATACAGGCATCCAAtGTCCCTGATCCAGACAAACGATTACAAGCTTTGTGGGTTACCTGCGATCAGTTACCAAAAAACAACAAGGCAAACTTCAGATACCTTATTAAGTTCCTTGCAAAGCTTGCACAGGAAAGTGATGTTAACAAGATGACCCCCAGCAACATTGCCATTGTCCTTGGTCCCAATCTACTGTGGGCCAAAACCGAAGGGAGCCTAGCAGAAATGGCTGCTGCAACCTCCGTGCATGTGGTTACTATAATTGAACCCATCATTCAGCATGCAGATTGGTTTTTCCCTGAGGATGTGGATTTTAATGTATCCGGCATGTTTTCAATGCCTGCGCCCCTGCCAAACAACGTTAACCACCTGACGACGCCAGATTATGACTCGGGCACCATAGAGAGGAAGAGACCTGGCAGCATGGTGGGCCCAGATGGTGAATTACCCCGGAGAGACAGttcaaaGACCCGAGACCCTGCATCCACTCCTCCAGCTCAGAGAAATGGCACTGGAGGGTCAGGACAGCTGAGTGTGGGGACCCCTGTGGCTGGATCTACAGGACCCAGTCCTCACATGGCACGCAGAGGCACCAAGAAGCCGGCCCCAGCTCCTCCTAAACCGGCCAACCCTCCACCAGGCCAACCAGCCAATCAGTCAGTACAGCAAGCCTCATCAGGCACGCCCCAGTCCCTCAGCCCCTCCCCTAGGCCGCTTTCTAGTCACTCTCCGACCAATCTGAGCCCCACACAACCGCAGGCTCAAACCAACACGACCCCTCGTCGCCACTCCAGCAACCAGCCTCCCATTCAGGCGCCCAATCACCCGCCCCCGCAGCCTCCCACTCAGGCCACTCCCCCTCCCCAACCCAGCACTCCAGCTGACCCCGGAGAAGACCCCTCCCCTCCCAGCACTCCCACTCCACCCAGCACCCCTCCGCCCACGGCAGTGTTTCACGACAGTCCCAGTCCCACCGCTCCCCCGGTGTTCCAGTCAGGATCGCTTCCTCGCCCAAGGCCTGTGCCTAAACCACGCAACAGACCCACTGTTCCCCCTCCGCCCCAGCCTCCAGCCACAGGAAGTGACAGCAATGGAATTTGCAGTGCTGCTTTTAAAACAATGGATTCGGGGGTGACATTTAAACCACTGGCTCGAGCTCTCGTTCCTGATATCGCCGTTGAGAAGCATGTTACCCAACTCAAGGACACAGACCTTGACACAGAGAGCACCGTCCTGTAAAAATGGCCTTGACCTCCCCCAGAAACCCTTTCCCTTAACCAAAGGTTTGCTCAAGGGCTGCTCTCCTCTCACCATTACCAAAGTGTTTATCATCTTGGCTGTATTTCTGTAATACCCTATGCTTAAGACAATCAACAATCCCAGTGGCACCAGGGAAACAGACGCCCCGAGATACTGAACGTTTATTTAAACATGCCTTTCGTTGTGatggcagcaaaaaaaaaaaaatcctgtattGCATGAGGAACTGGCTCTATACGGTGATGGGGTGAATTTGGTGAATGAGGTACTTGGAGGTGAGTCTTAAGTGGCCTTAGCTAAACAAAGCAATTGCTCAATTTAAAAAGGTGGAAAACTGTGGCTTTCTGCTTAGCTTGTGACTGCAGGTCTCCAGTCAGCTAAAACAgcacattccttttttttttttttttttatttgcaagcCTTACTTTTCCAGGTTGGAAACTACATGTAATACATTGGTATAAATATCATGCAAATGTCAAATGATTAGTTTTCTGCCATTGACAGCTGATGATTTCATAATTTTGGGGCATTAAAATGACTGGACCTAGTACACACTACTTAGCTATGTTTAAAAGTAATCCTGATTGGTTCATATGTGAAAGAGGCCATTTGTTATTGGACATTTCTAAGAAACAAAGTGTTCAGCTGTCATTTATGTTATAGAAAAGGTCAAAATATGTGCTTTAGTGATATTCTGGTATGGAAACTTTATATTATGgctttgtttgtatgtttaccAGGCCTTGACGAGGATAGCTTTGTATTTCCCTTCTTTTACCCCTGATATGGTACCaaagtggggaaaaaagtgCCACGAGGATGTTAGTCTTACTGTATAATAGCTAAGAGCAGACATAATTGCTTACTTTTTCCCCTCcttgtttcattttcataaactcTCGTTCGAAAGCGAACCATTTTGAATATGATTTCTGATCGAATCTGGCGTGAGGGGAAAATGTAGTCGATCTTGCTCGCCCGTTAGCTTTTCTTTATACATTTTCCTTGCCTTTACCATGCTGCCTTACCTAAGTACACTTACAAGAGCTATTTTACCGAGGTTTGAAAAGTGAACTGACTTCACACTTATGAAACAAAGAGTTGACGGTGTATTTGAAGTTCAGAGGCTTCGCGTCTAGAGGACTACATCTTTGTGGAAtttggaaaaagacaaaaaaactgcTTTGTATTACTGCttcaaagtgaaataaaaaaaaaaaaagtgaaacgaGAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128010 lncRNA downstream 1060 8148747 ~ 8154173 (-) True G86513
TU128016 lncRNA downstream 42520 8111193 ~ 8112713 (-) True G86516
TU127922 lncRNA downstream 100202 8054768 ~ 8055031 (-) True G86458
TU127863 lncRNA downstream 264012 7890303 ~ 7891221 (-) True G86413
TU127862 lncRNA downstream 266987 7887966 ~ 7888246 (-) True G86412
TU127996 lncRNA upstream 8534 8187641 ~ 8188917 (-) False G86505
TU127998 lncRNA upstream 8534 8187641 ~ 8190285 (-) True G86505
TU128056 lncRNA upstream 19811 8198918 ~ 8199124 (-) True G86553
TU128087 lncRNA upstream 110973 8290080 ~ 8290410 (-) True G86576
TU128132 lncRNA upstream 155300 8334407 ~ 8338700 (-) False cpped1
XM_043253112.1 mRNA downstream 26214 8126083 ~ 8129019 (-) True zdhhc4
XM_043253024.1 mRNA downstream 33143 8120334 ~ 8122090 (-) True LOC122355067
XM_043253006.1 mRNA downstream 35423 8115390 ~ 8119810 (-) True bricd5
XM_043253088.1 mRNA downstream 53335 8089481 ~ 8101898 (-) False tex2l
XM_043253087.1 mRNA downstream 53338 8089481 ~ 8101895 (-) True tex2l
XM_043253164.1 mRNA upstream 15116 8194223 ~ 8195216 (-) True hbae5
XM_043254435.1 mRNA upstream 24467 8203574 ~ 8205720 (-) True zgc:163057
XM_043253226.1 mRNA upstream 84003 8263110 ~ 8266628 (-) True foxj1b
XM_043253227.1 mRNA upstream 84003 8263110 ~ 8266368 (-) False foxj1b
XM_043253549.1 mRNA upstream 88667 8267774 ~ 8278165 (-) True mgrn1a
TU127575 other downstream 766323 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1051015 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1483986 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2081801 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2100880 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 169055 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 339128 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 339873 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 431445 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 503945 8683052 ~ 8687548 (-) False plbd1b

Expression Profile