RNA id: XM_043253708.1


Basic Information

Item Value
RNA id XM_043253708.1
length 1735
RNA type mRNA
GC content 0.45
exon number 10
gene id lipf
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7651748 ~ 7662731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACATTGGCTGGCGTTACCTGTCATTCAAAACCATTCCGGTGTGCAACGTGAACTGCCTTCGTTTTGCGAAAACTCGGGGttgtaaaatgaaacatttaaacctCGATTTAACAACAATAAAGATGTCGTGGCTGGTGTTATCACTGGTACTGCTTGCATTTGGGCTGGTTCAGTGCAGGCCACCTGTTGAGGACAAGACAGGACTGGACCCTGAAGTAAATATGAACATCAGTGAGATCATCAGACACTGGGGCTACCCAGCTGAAGAATTTGAAGTGGTCACTGAGGATGGGTACATCCTGAGCATCAATCGAATCCCACACGGGGTCAAAAACAAGGATGGACAAGaagCCAAGCCTGTAGTGTTCCTTCAACATGGACTTCTCGCTGCTGGAAGTAACTGGGTGACAAACCTGCCCAACACGAGCCTGGGTTTCCTGCTAGCCGACGCTGGGTTTGATGTGTGGATAGGCAACAGCCGTGGGAACACCTGGTCTAGAAAACACATCAACCTTGACCCTAAACAGAAAGAATACTGGGAGTTCAGTCATGATGAACTGGCTAAGAAGGATCTTCCTGCAGTGATAAACTTCATTACAAACACCACTGGCCAGGAGAAACTCTTTTATGTGGGCCATTCCCAGGGAACCACTATAGCGTTCATCGCTTTCTCCACAATGCCGGAACTGGCCAGCAAAATCAAGATGTTCTTTGCTTTGGCTCCTGTTGCCACAGTGGGGCTGACCAAGAGCCCCATGACCAAATTGTCTGTTATTCCAGAATTTCTCATTTGGGATCTCTTTGGACGAAAGGACTTCTTTCCTCAGAATGAGTTGATTAAGTTTTTTGCCACCGAGTTCTGCAGCAGAAAGCCTTTAAGCGTGCTCTGCGGGAACgtcttctttcttctctgtgGTTTTGATGAGAAGAACCTGAACATGAGCCGAACACCTGTGTACACAACACACTGCCCAGCCGGAACCTCAGTCCAGAACATGGTTCATTGGgctcaggcCGTGAAATCCAGTAAGCTTACGGCATATGATTATGGAAAAGCTGGAAATATGGCACATTATAATCAGTCGACCCCTCCCCTGTACAACGTGCGGGACATGACGGTACCCACAGCCTTGTGGTCTGGCGGGCAGGATACTCTGGCAGATCCTCAGGACGTGGCACTACTACTAACACAGATACCCAAATTGGTGTACCACCGTGACATTAAGCACTGGGAACATCTGGACTTCATCTGGGGTTTGGATGCCCCGCAAGAGATGTACAACAAAATTATCGCAATGATGAGGGAGAACGTgtgaagaaacattttgtttgagCTGTAGGTTTTATCAGCAGTTTTTAACATTCCTTGAGCTAATACTTTCGTACCTCTTTATTTGTTCTTTCTGTAAGCAGATGAACCCGTTTGTTTGAGGTGCGGGTAATCGAATCTGCAATTTGCGAATGTAAATTTGATATTGGAAACTGAATTAAGCCTTCAAGCCATTACCCAGAGACTTTTGCGCTCATGATCAGGGGTTGCCTTTTAATGTCTTTTACAAGGACATGCActtgtttaatgtgtttttttaactttagcTTTTACTAACCACTACATCCTCAATCTCAATATACTGTAGCATTTCATGACCCGTCTTATCGCCTTGTCATTTAAATCGACtgatttttgtaaaacatgaCTAGAAATAAACATCCaccgaagaaaaaaaaaaagaa

Function

GO:

id name namespace
GO:0001666 response to hypoxia biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127756 lncRNA downstream 15604 7634638 ~ 7636144 (-) True G86333
TU127757 lncRNA downstream 17192 7631396 ~ 7634556 (-) True G86334
TU127752 lncRNA downstream 34535 7615868 ~ 7617213 (-) True G86330
TU127746 lncRNA downstream 54750 7592801 ~ 7596998 (-) True G86325
TU127743 lncRNA downstream 60765 7588311 ~ 7590983 (-) True G86324
TU127781 lncRNA upstream 36287 7698665 ~ 7699014 (-) True G86354
TU127783 lncRNA upstream 42843 7705221 ~ 7705483 (-) True G86356
TU127784 lncRNA upstream 45482 7707860 ~ 7708194 (-) True G86357
TU127809 lncRNA upstream 184103 7846481 ~ 7846832 (-) True G86375
TU127862 lncRNA upstream 225588 7887966 ~ 7888246 (-) True G86412
XM_043253706.1 mRNA downstream 4957 7636843 ~ 7646791 (-) True stambpl1
XM_043253707.1 mRNA downstream 4971 7636843 ~ 7646777 (-) False stambpl1
XM_043253976.1 mRNA downstream 37381 7612135 ~ 7614367 (-) True ifit9
XM_043253979.1 mRNA downstream 39756 7609394 ~ 7611992 (-) True ifit10
XM_043254351.1 mRNA downstream 43032 7604853 ~ 7608716 (-) True LOC122355798
XM_043253670.1 mRNA upstream 58009 7720387 ~ 7735245 (-) False ptenb
XM_043253669.1 mRNA upstream 58009 7720387 ~ 7735245 (-) True ptenb
XM_043253457.1 mRNA upstream 85214 7747592 ~ 7754731 (-) True papss2b
XM_043253460.1 mRNA upstream 92479 7754857 ~ 7760517 (-) False minpp1b
XM_043253458.1 mRNA upstream 92479 7754857 ~ 7758644 (-) True minpp1b
TU127575 other downstream 262838 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 547530 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 980501 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1578316 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1597395 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 685784 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 855857 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 856602 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 948174 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 1020674 8683052 ~ 8687548 (-) False plbd1b

Expression Profile