RNA id: XM_043253747.1


Basic Information

Item Value
RNA id XM_043253747.1
length 4230
RNA type mRNA
GC content 0.44
exon number 13
gene id bmpr1ab
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11344459 ~ 11374806 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGGCTGTGATTGGAGGACTGAATCAGGGCTCATCGCGTTACGCGCAAGAGAGGAATGTTCCCTCACGCAGAGGCACAACTAGAAAGAAAAGAACGAGAGAAACCGGAGAAAAACGTCCTCGAAAGCAGGAGAAAATCACCCAAAACATCACCACGGAAAGTCTCTATAATTCACGCTTTGAAGTACACCTTCGTCACGAATCGCAAGTCCTAATTTGGAAGGATTTTGAGTTGTTTGCGCGGCTTCATCAATAGGCACTACAAAGGTTTTCCACAAACATTTGTGACTCTGCTCTGTGATCAGCTCCAGACTGAAGACTCTTAATGCTGATACCCATGAGTCCCCTTCATCATCATGCGCTGCCACCCTTTCTACCCTGTAAGGGTCTTAAACAAGAGGAGGCTGTAAAGAGGCCTTGAAGTCTGCATCACGCAACATACTCTTCCTCGGTCTTCACACCTTCACATCTCATTGGCCACTTTGTTTGACTCAAAAGAATACAGCACAAGCAAGACAGCTATATAGTTTTTGGATCTCAGCCAACATGATAAAAAACTCGTCCATGGTCATCGTCTTAGGCGTTTTGGGAGCTGCCTTCCTTCTCTCGCCATCTGCTGAGGGTGGGCAGAACCCGGACTACATGCTTCACGGCACTGGAGTCAAGCCCGGCCCAGATCAAAAGAGAGCCCAGTCAGGGGACGGATCCACTGTGGCCCCAGAGGATGCTGCCCGCTTCCTTAGCTGCTACTGCTCAGGCCACTGCCCAGAAGATGCCACAAACAACACCTGCGAGACCAACGGCCAGTGTTTTGCTATCATAGAGGAGGATGAGCACGGCGAGGCTATCCTCACCTCCGGCTGCATGAAGTATGAGGGCTCCCACTTCCAGTGCAAGGACTCCCCTAATGCTCAGACCAGACGGACCATTGAGTGCTGTTCCACTGATTTCTGTAATAGAGACCTTCAGCCCACACTTCCACCACCTATTCCAGGAAAGCCTTCGTTGTGGAACGCACACTTGCTGGCCTTTCTGATCTCCGTGACGGTGTGTTGCTTCACTTTGGTGGCAATAACTGTGGTGTGTTACTACAGGTATAAGCTGCAGACAGGACGGAGACGGTACCAGAGAGATCTGGAGCAGGACGAGGCCTTCATCCCTGCAGGAGAGTCTCTCAAAGATCTCATTAGTCAGTCCAGCACTGGCTCCGGTTCAGGGCTCCCCCTGCTGGTCCAGCGCACCATTGCCAAACAGATACAGATGGTACGTCAAATCGGGAAAGGGCGGTATGGAGAAGTGTGGCTTGGTCGTTGGAGAGGAGAAAAGGTTGCAGTGAAAGTGTTCTTTACCCGTGAAGAGGCTAGCTGGTTCAGAGAGACCGAGATTTATCAAACCGTGCTCATGAGGCATGAAAATATACTCGGTTTTATAGCTGCTGATATTAAGGGCACAGGAGCGTTCACTCAGCTTTTCCTCATCACGGACTACCATGAGAATGGTTCTCTCTATGACTATCTGAAATACACCACCCTGGACACCCAGGCTCTGTTGAGGCTAGCCTATTCTGCAGCCTGCGGCCTGTGCCACCTCCACACAGAGATTTACGGCACGCAGGGCAAACCTGCCATCGCACACAGAGACCTGAAGAGCAAAAACATCCTCATAAAGAAGAATGGCACCTGCTGCATCGCTGATCTGGGCCTGGCTGTGAAATACAACAGcgATACCAATGAGGTGGACGTTCCTCTGAGTACGAGAATGGGCACACGGCGGTACATGGCACCAGAGGTCCTGGATGAGACTTTAAATAAGAACCAATTCCAAGCGTACATAATGGCTGATATTTACAGCTATGGGCTCATTGTTTGGGAGATGGCCCGCCGATGCGTGACAGGAGGTATTGTTGAGGAGTATCAGTTGCCATACTGGGACATGGTACCTTCAGAACCGTCCTACGAGGACATGAGGGAAGTGGTGTGTGTTAAAGGCATGAGACCAGTGGTGTCTAATCGCTGGAACAGTGACGAGTGCTTAAGGGCCATGCTAAAGCTCATGTCTGAGTGCTGGGCACACAACCCAGCCTCTCGCCTCACAGCTCTTCGAGTCAAGAAAACACTCGCCAAAATGGTTGAATCACAAGATATCAAAATATGATCAGTTTTCCCTCCAATGCCGGTCTGAGAGAAATCATTGAGATATTTCTGCTCACTTTTATGAATTATTGCCTCAGTTCCTAAACAGACCTGTGGGAGCGCTGCTGAGCAGAACATTTGCCTCCCTGTCTGGCTGCGTTTCCTCGTCCTGTCGCAGGTAGTGTCATGTAGCACCCTCTGCTGGACAGTATGTGCCATAACGCATCCACGAGGAACCAAGGACAACTGTTCTGCAGGCATTGGTTCTCACGTCATCCCCATCACcaccatttttctttcttcagaagCTCTTTTATATATTGGGAGAGATTCGAAGTGCATACGGTGCTTTCTGTGAAAGCTGTGTAATACGATACGTCTGTATGGAGGAGCGGCATGATGCCAGCAGTGATGGAGCCGTCTGGGAGAAGGCTGACGACTGACCCCTCTCTTATTGACTGAGTTGAGAGGTGGACATATTGGGGGTGATATTCGGACCAAACGCCCATCAATATGCTTGGGATATGCTCCAACGTGGCTACCGTCGCAAATGGCAAGTTTGCATTTGGATCATGTGCAACTGTGGCCACTGAAACATCAGAGGTGAACGCACcctatttaattcaaatgacccttattatatgtataaaacaaaacaaaaaaaagtcccGGTACTACATATcgatattttaattaatagcctttttttttttttttttaaactgctttcCTTTTCTGAGAATCTGTCCAAAAAAAGAGTGTTAGCAATAAGGTTTTCTATTTGAAACCTTCCCATTTTCTGAAGTGTGGCAATATATTCACTGTTAGGAATAGAAAGTTCAAGTATAATAACAGGAGAGATGTGATCATTACTCCAGATTTGGCTTGAAAAATTGAAGTACCACCGGTCAAATATTGCCAACACCGCGGGCCATATAAGATCCATCCATCTAATATATGGTGACTTTCAATCTCTCAGAATGGCAGATCTGATCTGGCTTATTGCAGGTGTGTCAGTGCAGATGTATGCCCACTGCTCCCGAATGCCTcataaatgttgtattttatcCAATAGCCTTCGAGTCAGCCTCACTATATCACATCTGATTCATCAGTGTCAGGTTGGATTGCTGTTTTCAATGCctcatttaaacagttttgcCTTGAATCTAATGTTGTGACGCTTGGGAATCATATGACTCATAAATGTCTAATGTGGTAGaataatgcaaatgcatgtgCTATTTATTCATGTCATGTCATATAGTATAAATTACTGTGGTAAGATATTTTTACTTGCAGGACTGTAACACTGTTCTTGCAACTGAAATTCTCAATGTTTTTACAGAGCAGCTCAACCTTTCAAATACTAAATTTATGACTTCAAGATGAAATTCTACATTTAATGACTTCCTATGAAAGTGTGGGTGTGAATTATCATTATCTGTCATTTCTATGTGTAAAATTAGACcctttgtatgtattttacagaAAAGTCAGGACAGGCAACTTCATATAcgtgaaaatactttttttgttcataagattatgtgaatgcatttttttgcaagaGCATTGTCTCAAACTTAATTGAAACAACTACACATTATTTCTACTTGTGGAAAATACAGGTTTAATTTCAAAACCAGGGTCCTTTgtctggggaaaaaaaggtcATTCATGTTTTCAGGAATGATGTATTAACCAGGGGGCATTTAAATAACTTGATATTGCAGTCTgagaaatataaattatacaggTCCAAAACTCTTTGCTTTGCATCGAAGATATCTCCCATTGCTTGTGTGTCTTTTCTTTGGGCTACAAGCCTATTCTGTTCATTGCAACCATGCCAGTTACCttgtaaaatctaatttaagcTCATATGTCTAGAGAAATGACTAcacaatgtttttgtcttaattGTTTAATATGTAAGGAAATGTAAAACGGCCTGAATAATATgaactttgttttaattgtgcACAACATCTGGTTTTAAGAGAGGTGCCTTATGTTTACCAAGAAAAGCTGTTCTGTACACAGAATTAGTCCAATGTATCAATTTTCAAGTAAATTACCTTATTTTAGTACacaa

Function

GO:

id name namespace
GO:0030509 BMP signaling pathway biological_process
GO:0060972 left/right pattern formation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129367 lncRNA downstream 25538 11316383 ~ 11318921 (-) True G87414
TU129370 lncRNA downstream 28461 11312472 ~ 11315998 (-) True G87417
TU129457 lncRNA downstream 60873 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA downstream 60873 11278324 ~ 11283586 (-) False G87484
TU129455 lncRNA downstream 71157 11271741 ~ 11273302 (-) True G87482
TU129509 lncRNA upstream 204382 11579188 ~ 11580353 (-) False LOC122355534
XR_006252227.1 lncRNA upstream 204415 11579221 ~ 11580359 (-) True LOC122355534
TU129560 lncRNA upstream 378243 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 424199 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 424786 11799592 ~ 11800481 (-) True G87552
XM_043254472.1 mRNA downstream 12666 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA downstream 12673 11324401 ~ 11331786 (-) False sncgb
XM_043253246.1 mRNA downstream 124907 11217292 ~ 11219552 (-) True six2b
XM_043254109.1 mRNA downstream 221621 11119418 ~ 11122838 (-) True zfp36l2
XM_043253869.1 mRNA downstream 260423 11082205 ~ 11084036 (-) True hcar1-4
XM_043254262.1 mRNA upstream 989 11375795 ~ 11392390 (-) True ldb3b
XM_043254263.1 mRNA upstream 989 11375795 ~ 11392383 (-) False ldb3b
XM_043253225.1 mRNA upstream 19451 11394257 ~ 11420206 (-) False opn4b
XM_043253224.1 mRNA upstream 19451 11394257 ~ 11420206 (-) True opn4b
XM_043254125.1 mRNA upstream 65963 11440769 ~ 11528254 (-) False usp54b
TU129464 other downstream 21856 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 298577 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1855147 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1855147 9484946 ~ 9489312 (-) False ormdl3
TU128627 other downstream 1855169 9481630 ~ 9489290 (-) False ormdl3
TU129586 other upstream 458073 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 574465 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1274577 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1295819 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 1377098 12751904 ~ 12752678 (-) True G87845

Expression Profile