RNA id: XM_043253773.1


Basic Information

Item Value
RNA id XM_043253773.1
length 4106
RNA type mRNA
GC content 0.44
exon number 13
gene id tcf7l2
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13609420 ~ 13691340 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttcttgtgtgtttcTCCCTGTCAATAATCCCGAATCCAGACTCTCTCTATTTCCATCCCTCTCTATCTGTCAATCAGCGCCGCCTTTGAACTGAAAACCACTCCGACCAACTTCAACTCCCTCAATCCGAGCGCCTCAGCTCCGTCTCCGGCTTCTGTTTCTGCCAAGATTGCCCTCTTCTTTTTGAGTTTTGAACACTCACCCAGCCAAACGCCACTGCGAGTCCCTAAACTTAAAACTCGGGATTCGGGGATCACACCAAGATCAAGGGTTTAAAAACTTTTGGGTGTTTTTGGCCCCCCGCAAAATTAGCGCTCCTCGGGAAAAATGCCGCAGCTGAACGGCGGTGGAGGGGACGATCTGGGTGCGAACGATGAAATGATTTCCTTCAAAGACGAAGGCGAGCAGGAGGAAAAGATTTCGGAGAACTCCTCAGCAGAAAGGGATTTAGCAGATGTCAAGTCTTCTCTCGTAAACGAGTCGGAAACGAATCAAAACAGCTCTTCGGATTCCGAGGCGGAAAGACGGCCTCCGCCTAGATCTGAAAGTTTCAGAGACAAAACAAGAGAAAGTTTAGAGGAGGCTGCGAAAAGGCAAGATGGAGGGCTGTTCAAGAGCCCACCGTACCCGGGCTATCCATTTATAATGATTCCCGACCTCACGAGCCCGTACCTCCCGAACGGATCGCTCTCGCCCACCGCGCGCACATATCTACAGATGAAATGGCCCCTGCTAGATGTTCAAGCAGGAAGTCTTCAGAGTAGACAAGCACTTAAAGATGCCAGGTCACCTTCTCCAGCACACATCGTTTCTAATAAGGTCCCCGTGGTACAGCACCCTCACCATGTGCACCCGCTCACACCTCTGATCACCTACAGCAATGAGCACTTCACGCCTGGGAACCCCCCTCCACATCTACAGGCAGACGTGGACCCCAAAACAGGAATCCCAAGGCCTCCACATCCTCCAGATATATCTCCCTACTACCCCCTGTCACCTGGCACTGTAGGCCAGATTCCCCATCCGCTAGGATGGTTAGTACCACAGCAAGGTCAACCAGTTTACCCAATCACGACGGGAGGTTTCAGACACCCCTACCCAACTGCCCTCACTGTCAATGCGTCCATGTCAAGGTTCCCTCCTCACATGGTGCCCCCCCACCACAGTTTGCACACCACAGGGATCCCCCACCCAGCCATCGTCACGCCCAACGTCAAGCAGGAGTCCTCTCACAGTGACATCGGCTCCCTCAACAGCTCGAAACATCAGGATGCgaaaaaagaggaggaaaagaagAAGCAGCCGCACATAAAGAAACCTCTGAACGCATTCATGCTTTACATGAAGGAAATGAGAGCCAAAGTGGTGGCAGAATGCACACTGAAAGAGAGCGCAGCTATCAACCAGATCCTAGGCCGAAGGTGGCATGCTCTGTCTCGAGAGGAGCAGGCCAAATACTACGAGTTAGCCAGGAAAGAACGACAGCTTCACATGCAGCTGTACCCCGGCTGGTCGGCACGAGACAACTATgggaaaaagaagaagagaaaaagggAAAAGCAGGCAGGAGAGGGCAATGATCTGAGCGCCCCAAAGAAGTGTCGCGCACGCTTCGGGCTCGACCAGCAGAATAACTGGTGTGGCCCATGCAGgAGAAAAAAGAAGTGCATTCGCTACATTCAAGGTGAAGGCAGCTGTGCCAGTCCTCCTTCTTCGGACGGAAGCTTACTAGAGTCCCCCCCATCCTCCCCCTCCATGGTCTCTCCCTCCCCGTCCTCGAAAGAGTCCAAACCACAGACTGAACAAATGCAACCTCTCTCACTGACTATGAAACCGCCCCCCCTGCTCTCGTCGTCCCAACACCAacacctctccatggctccgcCTCCACCTTTAGCTCTGTTGGACAACTCCGGGGCGGGCAAAACGTCCGGCTCGGCACACAATGGCTCCTTGGACCCCTCAGACGTGTCGTCGTCCCGACCCACAGGCTCCGCCTCCTCCAGGCCCACATCGGCGTGTCATTCCCACTCTCTGCTGCCCAGCTCTGCCACGACGCAACCCCTTTCGCTCGTAACCAAGTCGATAGACTAGCttcgttgtttttttaaaccagctttctctgtctgtctgtccgtctgtcacACGTCTCGTCTTTTTCCATTCTGCGTTCTGATTCTCTTGTTTTTTCTGTGCGATATGGCTTTGAAAATTTCGTTAATTCTTTATCAAAGTTCATTGGTCAATATTTGACCTGTCATTatctaaaacaaatgaaattattatgattaaatattgataattaaaTACACTAAGTTGTAGAGTATAGCTTTGTGAATCTGCCAaattttttatgacttttttttgggttcgtttttgttcatgttttgctttttgttttacagctgtacaacagaaaaatgcataattgttATGTAGTTTTACATAGACATGTTTAAAGACAGATATACAAAGTAGGTGAGGATTCGGTGAGCCCTTTTCTCAAAGAATTGGTTCTCCttcattatttgtattaaatacgAGCTTGTGAACCAATCATTTTACAGCTGTCCAAAACTCAGAGGGCACGAGGACCGTGGAGACACCTCTCCGACTGAGGAACAACTTTAATCGTGATGTTACTTGTTCTTgtttaaatgtacagaaatatgGGGGGGTTACTGTGTTAATATGCATTGTTCCATTGCGTTGTCCGttttacctttcttttttttgttgttgtttaccaGGGGGAGGGAGGTTGACTCGGGTTGGGGTGGGTGGACTCGATTGGATGGGTGTTTTGGGGTGGGAGGGTGGGTGGGTTTTGGGATATTCAATACAAACTGTCACAATGCTAGGACCAGTAGTATTTATTGCTTTAGAGATTGCTTGTCGTATCTTGTATGTTGTCCCTTTTTgaaatcttttcattttcttaatacattgtataaatattctttttcttAACGTAAgcaacttatatatatatataaatgatccATTTTTACAAGGAGGTTTTgaagtttcaaatgttttattgttttgacatgaattttatttttattttttatttttgtttcttttgttattttcttgaAAACCAGGATTCCACCTAAACTACAGTGtagattctcaaaaaaaaaaaactaaaaaagcaaaaactcaaaaaaaacaaaaaaactacaacgAACAGACGTATGCACAACTTAATTTTTAGAAACATATCTATAAGCCATTTTACAATAGGTGAAAAGGAAACTTGAAATGGGGACGGTGGGTTCCATGTCTTCAGTAGTCGAATTTCGTCTCAAGCCCTTCTTTTCTATTGCACAGTCTCATCTCCACCGGACTGTAGAATCGTGTACAGATTTTTTCCCGTGCCAAAATTTGTGATAATTTCCTCTCCACCTCTTACAACGCTGTAGGTTCTTTCGTTGtccaatgtttgtttttttcttttctttttcaaccATAATTTGCTGTGACGTTACATAGATTGCTATGTATGTAGTATAAATGTTGCTATAACAAATGTGTTTGGTAGCAGAttgtcaaataataaaatttaaacttaataaaagACGGACGTCATACTGTATAAACCCTGAAGGGCCAAATTATGTATATTAGGAGGTtcataaaaaactattaaatactacaaaaaaacacaaactgccACTTTTAAGTACACTACTACATATAGGTAGATAGAAAAAATAGGCATGTTGATGTTGCAAGAAGCTGTAAAAAAGCTACAAGAGAATCATTCATTCGGTGCCATTGTAGTTGACATGACGCAACTGTAACCCGTCGATTACTTCTCTGGTTTATTAAGATGCTAATGATGAATAGTTTGAATGTTTCCTTAACGGCTGTGATGTTCCTGTTCTCTTTTATgctcttatatttttttttattttggtttgtttttatttcatttggttttttttttgttttgttttttttgtttttgttttccgttttgttttccattatttGAAATGGTTCCCAAAAACCATGTtttgtaatgaataaatgttaatgctGTACAGTCTCTGTAGCATGCAGTTCTGTATTAATAAAAGCGAGTTAGTATGTGAA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0044333 Wnt signaling pathway involved in digestive tract morphogenesis biological_process
GO:0007420 brain development biological_process
GO:0048699 generation of neurons biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130329 lncRNA downstream 70037 13538691 ~ 13539383 (-) False entpd1
TU130281 lncRNA downstream 148175 13460145 ~ 13461245 (-) True G88035
TU130280 lncRNA downstream 149555 13458456 ~ 13459865 (-) True G88034
TU130263 lncRNA downstream 175295 13433894 ~ 13434125 (-) True G88019
TU130253 lncRNA downstream 177225 13429406 ~ 13432195 (-) False LOC122355808
XR_006252233.1 lncRNA upstream 17720 13709055 ~ 13712541 (-) True LOC122355666
TU130373 lncRNA upstream 18731 13710066 ~ 13710267 (-) False LOC122355666
TU130423 lncRNA upstream 133265 13824600 ~ 13894358 (-) True G88146
TU130511 lncRNA upstream 302325 13993660 ~ 13994186 (-) True G88205
TU130512 lncRNA upstream 303037 13994372 ~ 13995952 (-) True G88206
XM_043254237.1 mRNA downstream 52330 13555693 ~ 13557090 (-) True crygmxl2
XM_043254360.1 mRNA downstream 54395 13553556 ~ 13555025 (-) True crygmx
XM_043253502.1 mRNA downstream 69119 13523668 ~ 13540301 (-) True entpd1
XM_043253501.1 mRNA downstream 79429 13523668 ~ 13529991 (-) False entpd1
XM_043254188.1 mRNA downstream 164693 13436907 ~ 13444727 (-) False casp7
XM_043253479.1 mRNA upstream 28336 13719671 ~ 13839456 (-) False vti1a
XM_043253481.1 mRNA upstream 28336 13719671 ~ 13839456 (-) False vti1a
XM_043253478.1 mRNA upstream 28336 13719671 ~ 13839456 (-) False vti1a
XM_043253480.1 mRNA upstream 28336 13719671 ~ 13839456 (-) True vti1a
XM_043253473.1 mRNA upstream 154838 13846173 ~ 13854773 (-) False acsl5
TU130001 other downstream 856742 12751904 ~ 12752678 (-) True G87845
TU129915 other downstream 933948 12649383 ~ 12675472 (-) False prr15lb
TU129914 other downstream 933948 12670625 ~ 12675472 (-) False prr15lb
TU129639 other downstream 1658265 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 1773808 11832879 ~ 11835612 (-) True G87569
XR_006252179.1 other upstream 281547 13972882 ~ 13976511 (-) False srsf2a
XR_006252180.1 other upstream 281547 13972882 ~ 13976511 (-) False srsf2a
XR_006252178.1 other upstream 281547 13972882 ~ 13976511 (-) False srsf2a
XR_006252177.1 other upstream 281547 13972882 ~ 13976511 (-) False srsf2a
XR_006252176.1 other upstream 281547 13972882 ~ 13976511 (-) False srsf2a

Expression Profile