RNA id: XR_006252218.1


Basic Information

Item Value
RNA id XR_006252218.1
length 2007
RNA type transcript
GC content 0.52
exon number 16
gene id tcf7l2
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13609420 ~ 13691340 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttcttgtgtgtttcTCCCTGTCAATAATCCCGAATCCAGACTCTCTCTATTTCCATCCCTCTCTATCTGTCAATCAGCGCCGCCTTTGAACTGAAAACCACTCCGACCAACTTCAACTCCCTCAATCCGAGCGCCTCAGCTCCGTCTCCGGCTTCTGTTTCTGCCAAGATTGCCCTCTTCTTTTTGAGTTTTGAACACTCACCCAGCCAAACGCCACTGCGAGTCCCTAAACTTAAAACTCGGGATTCGGGGATCACACCAAGATCAAGGGTTTAAAAACTTTTGGGTGTTTTTGGCCCCCCGCAAAATTAGCGCTCCTCGGGAAAAATGCCGCAGCTGAACGGCGGTGGAGGGGACGATCTGGGTGCGAACGATGAAATGATTTCCTTCAAAGACGAAGGCGAGCAGGAGGAAAAGATTTCGGAGAACTCCTCAGCAGAAAGGGATTTAGCAGATGTCAAGTCTTCTCTCGTAAACGAGTCGGAAACGAATCAAAACAGCTCTTCGGATTCCGAGGCGGAAAGACGGCCTCCGCCTAGATCTGAAAGTTTCAGAGACAAAACAAGAGAAAGTTTAGAGGAGGCTGCGAAAAGGCAAGATGGAGGGCTGTTCAAGAGCCCACCGTACCCGGGCTATCCATTTATAATGATTCCCGACCTCACGAGCCCGTACCTCCCGAACGGATCGCTCTCGCCCACCGCGCGCACATATCTACAGATGAAATGGCCCCTGCTAGATGTTCAAGCAGGAAGTCTTCAGAGTAGACAAGCACTTAAAGATGCCAGGTCACCTTCTCCAGCACACATCGTTGGGCCCTTCTGCTTGGAATTCCCCGGACAGACTGATCTGAGTCTTCACCAATTACAGTTGTCTAATAAGGTCCCCGTGGTACAGCACCCTCACCATGTGCACCCGCTCACACCTCTGATCACCTACAGCAATGAGCACTTCACGCCTGGGAACCCCCCTCCACATCTACAGGCAGACGTGGACCCCAAAACAGGAATCCCAAGGCCTCCACATCCTCCAGATATATCTCCCTACTACCCCCTGTCACCTGGCACTGTAGGCCAGATTCCCCATCCGCTAGGATGGTTAGTACCACAGCAAGGTCAACCAGTTTACCCAATCACGACGGGAGGTTTCAGACACCCCTACCCAACTGCCCTCACTGTCAATGCGTCCATGTCAAGTCTTCTCTCCTCCAGGTTCCCTCCTCACATGGTGCCCCCCCACCACAGTTTGCACACCACAGGGATCCCCCACCCAGCCATCGTCACGCCCAACGTCAAGCAGGAGTCCTCTCACAGTGACATCGGCTCCCTCAACAGCTCGAAACATCAGGATGCgaaaaaagaggaggaaaagaagAAGCAGCCGCACATAAAGAAACCTCTGAACGCATTCATGCTTTACATGAAGGAAATGAGAGCCAAAGTGGTGGCAGAATGCACACTGAAAGAGAGCGCAGCTATCAACCAGATCCTAGGCCGAAGGTGGCATGCTCTGTCTCGAGAGGAGCAGGCCAAATACTACGAGTTAGCCAGGAAAGAACGACAGCTTCACATGCAGCTGTACCCCGGCTGGTCGGCACGAGACAACTATgcGGGTAACTATCaggggaaaaagaagaagagaaaaagggAAAAGCAGGCAGGAGAGGGCAATGaacacAGAGAATATTTTCCAAACCCTTGCCTTTCACTCCCTCCGATTACAGATCTGAGCGCCCCAAAGAAGTGTCGCGCACGCTTCGGGCTCGACCAGCAGAATAACTGGTGTGGCCCATGCAGATGCAAATACCCCTAAGAAGTGTCGTGCCTTGTTCGGGCTTGACCAGCTGGGTTTATGGTGCAAACCCTGCAGgAGAAAAAAGAAGTGCATTCGCTACATTCAAGGTGAAGGCAGCTGTGCCAGTCCTCCTTCTTCGGACGGAAGCTTACTAGAGTCCCCCCCATCCTCCCCCTCCATGGTCTCTCCCTCCCCGTCCTCGAAAGAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130329 lncRNA downstream 72353 13538691 ~ 13539383 (-) False entpd1
TU130281 lncRNA downstream 150491 13460145 ~ 13461245 (-) True G88035
TU130280 lncRNA downstream 151871 13458456 ~ 13459865 (-) True G88034
TU130263 lncRNA downstream 177611 13433894 ~ 13434125 (-) True G88019
TU130253 lncRNA downstream 179541 13429406 ~ 13432195 (-) False LOC122355808
XR_006252233.1 lncRNA upstream 17717 13709055 ~ 13712541 (-) True LOC122355666
TU130373 lncRNA upstream 18728 13710066 ~ 13710267 (-) False LOC122355666
TU130423 lncRNA upstream 133262 13824600 ~ 13894358 (-) True G88146
TU130511 lncRNA upstream 302322 13993660 ~ 13994186 (-) True G88205
TU130512 lncRNA upstream 303034 13994372 ~ 13995952 (-) True G88206
XM_043254237.1 mRNA downstream 54646 13555693 ~ 13557090 (-) True crygmxl2
XM_043254360.1 mRNA downstream 56711 13553556 ~ 13555025 (-) True crygmx
XM_043253502.1 mRNA downstream 71435 13523668 ~ 13540301 (-) True entpd1
XM_043253501.1 mRNA downstream 81745 13523668 ~ 13529991 (-) False entpd1
XM_043254188.1 mRNA downstream 167009 13436907 ~ 13444727 (-) False casp7
XM_043253479.1 mRNA upstream 28333 13719671 ~ 13839456 (-) False vti1a
XM_043253481.1 mRNA upstream 28333 13719671 ~ 13839456 (-) False vti1a
XM_043253478.1 mRNA upstream 28333 13719671 ~ 13839456 (-) False vti1a
XM_043253480.1 mRNA upstream 28333 13719671 ~ 13839456 (-) True vti1a
XM_043253473.1 mRNA upstream 154835 13846173 ~ 13854773 (-) False acsl5
TU130001 other downstream 859058 12751904 ~ 12752678 (-) True G87845
TU129915 other downstream 936264 12649383 ~ 12675472 (-) False prr15lb
TU129914 other downstream 936264 12670625 ~ 12675472 (-) False prr15lb
TU129639 other downstream 1660581 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 1776124 11832879 ~ 11835612 (-) True G87569
XR_006252179.1 other upstream 281544 13972882 ~ 13976511 (-) False srsf2a
XR_006252180.1 other upstream 281544 13972882 ~ 13976511 (-) False srsf2a
XR_006252178.1 other upstream 281544 13972882 ~ 13976511 (-) False srsf2a
XR_006252177.1 other upstream 281544 13972882 ~ 13976511 (-) False srsf2a
XR_006252176.1 other upstream 281544 13972882 ~ 13976511 (-) False srsf2a

Expression Profile