RNA id: XM_043253845.1


Basic Information

Item Value
RNA id XM_043253845.1
length 2840
RNA type mRNA
GC content 0.48
exon number 12
gene id ccser2b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5280381 ~ 5330233 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAGGAACGCTTACGTCAGTGTCAGCTGTTTTCATACAACATGCTCTCATGCCGGCAGGACGTTACTTCACAATAACATAGAATGCGATGACAAAAGCTAGTCTTCCTATGCATGGACAGCCGTATATCTCGACTAAGCTTCGGATCAGGTGGAAGCAGTGAACGGTTTGACTCCTGTGGTGGATTTCCACGCCCAGCTGTGTTCGCCTTCAATCGGATGAAATCGTACAGACGGCCGCTCAGATAAGTTCTGTCCTCACATCCATGGTGGTGAACCTATCTGATGGAAAGGAAGGCTGTCAAACAGCTCAACATGGTCTCCAGGCTGCCCAAGTTTGCTTCCCGTCCCTCAGGCACCATGACTGCCCTTCCCCAAGGATCTGCCCTCCCGGTTTCCTCCTCAGAATCTAAAGGTGGACTTCTAGTCAGGCCCAATAATATGACACGTCTACAATCCCTAAATTGGAGAAAGGGTGAAGAGGACATTGGAAATAAAGTTCAACACTGTGACTTGGATGTAGAGACTAGTGCAACTAATGTAACATCAGTGATGCTGACTAAAAAGCCTTCCCCTGCAGctgcagtaaaatgtaaaagtgctttacaaagTAGTTGCCCCAGGAGCATACCCCAGCCTAGCAAAACCTTTCCCCGCATGACTACTCCAAAACGACTTTCAACAGGAAATCCGCTGTATAATAATATGGCTTCTCAGAATGGAGTAGGTGTTGGTAATGGGCGATGTGGTTCCTCAGGTCCCGGTGTTGGTCATGTTTCCCAACAAAGAACCCTGCAGAGCAAACTATCCCTGTCCAATGACAGCATCAAGTCTGACTCTAAAGACAGCATAGTGCGCTCTCAGAGTTTTACTCACTCCAAGAGGGCAACATGCCCCACAAACCCACCTATTACCCGTTCCTTCTCCTTTAACAAAGCTACAGAGCTTGCTAAGGAACTTCCCAGACCTTTGGCACAGTCTCCAGTGGCTAAATCTTCCCTCATACAGCCCAATACAGTATTATCcgaagaaaaagtaaataaatacggAATTCCAAGGCCTGCTGTAACTACTAGCAGTCATCTTTTGCAGACAAACACAATAAAGAAATCTCTTTTACCCAGCTTTTCAGGTAACAAAACTTCTGTGCTTAGTTATAGACTTACAcgtccaactctaatcaaacatcCCCGTCCTGTTCTCCTCGGAATTGTCCAAAAAGATGAAGAATTGAGTAAAAATGTCCAAGACACTACAAAGATAGCAGAACCCAGTTCAGAACCAAGTAGCAACATTGCAAGTATTGAAACTGTCCCAGATGAGACTTGTTTTGAAGCAAAGGAGTCTGAAGGGAGTCTGGGCCCCTCCTTGGAGGACATGTCGCTATCATCGTCCTCCTCTGTGGAGCATAATGACACTAGTGAAGAGTACATGGATGACTTTGATAATCTTGGGAATGGAGGTGAGACCCTTCTGCTGCCTAGCCTCAGCAAAGGGTTGGATCACTTTGGACTGTGTAAAGATGACAACACTCTAATTAGCAAGTGCAATGAGGAATCAGCTGTGACCAGCCTGCACAACTTCTTATCCGAAACTGTTGACTGGGCAGGGATGGGCCTCACAGCTGGTAAAGATGGCTTTGAGCGTGAGACATTGTCCCCTGTAGGTGATTTTCCTCATGGATCGTCTTTGGACCTATCACCCTCAGATAGCTCTGGAGGAACTTACATGTGGGACGAGGAGGGAATGGAGGCTCTGGGAGGCTCTGGACACCCCTGTGGAAGCTTTGATTCTGATCTCAACAGCATGgCCATTCTCGACAACCTGGAAAATGTGGAGTCATGTGACCTGGAGGAAGATGACCTCATGTTGGATTTGGACCTGTCTGAAGATGCATCGTTACACAGTGACACTGATGGGACATCACCTTATGAATACTCTGAAAAAGATGGCTGGCCTTCTCAGAGGTGGAAACGACCGCAGCTCTGGGGCAGGAGCGATCAGTTCCGCCGTGAAAACAGAAGTGGCATTTTACAGTCGTTTGACGGCGAACAGGGGCTGGAGCGGTCAAGGTCAGACCATGTGACATTAGATGAACTGACTCTGAAACTCATGACTCAAGACTGCTCTTCTGTCAAAGAACAGCTGCTTCAACTGAAGACACTGCTTCAGatggAGACAGAGGGTTTAGTTGAGGATACCTTAGAGGCTAATACTCCATCATCCACTGACCAATCTTTACTTGATCAGAAGGTGGAGCTGCTCTTGAAAGAGGTTCAAGAACTGAGAGATGAGCTCAGAAGCAAAAACAGGATGATCGCTGAACTTTCCCAGCAGCTGtcTTCTCCAGTAGAGGATATGCAGTGCCGCTGTTTGCAGGGGTCAGAGGCTAACAAGGAGTCAACGGAGCACCAGGACAAAGATACTCAAACCTTGTGGAAGGCACACAATGGCATTTTGCTTGCCCCTATCCTCTCCTCTTGTCAACACTCACAGCGGGGGAGTGTGCGGCCATGTGCACCACGTCACCACAGACAGAGAGTGGAGCATCTAGTACATTACTTCAGAGACACTGCGTGCTTCAAATACTACAGACTTCCCGATTCTTACCCAACAAGCTCCACAACCATGAAGGACTGTCAAGCCCAACCTCTCCAGAGGCCCTTTGTGACGGTTTGGATGCCGAGCCTGGTCACCACCCACTGATGCCCCAGTCCTGCTCACCAGACCTAAAAAGTCCCATTACTGTTGAGTCTACCCCAAACTGTGCTATACCAACGGTAACTATATCTGCTGACAGCTCTGCTGCCTTCTCTTCCAGAACTTTTCAGAGCTCTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126767 lncRNA downstream 831984 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 871898 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 873060 4411340 ~ 4412200 (-) True G85569
TU126745 lncRNA downstream 972212 4312579 ~ 4313048 (-) True G85553
TU126743 lncRNA downstream 973356 4311453 ~ 4311904 (-) True G85551
TU127055 lncRNA upstream 92851 5423084 ~ 5426127 (-) False lsm5
TU127056 lncRNA upstream 92851 5423084 ~ 5426511 (-) False lsm5
TU127129 lncRNA upstream 397071 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 480424 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 490116 5820349 ~ 5821178 (-) True G85891
XM_043253609.1 mRNA downstream 230145 4929813 ~ 5055115 (-) True LOC122355389
XM_043253608.1 mRNA downstream 242497 4934872 ~ 5042763 (-) False LOC122355389
XM_043253007.1 mRNA downstream 868363 4412573 ~ 4416897 (-) True LOC122355055
XM_043254333.1 mRNA downstream 980045 4299048 ~ 4305215 (-) True LOC122355775
XM_043253162.1 mRNA downstream 1048031 4232549 ~ 4237229 (-) True LOC122355129
XM_043253686.1 mRNA upstream 30131 5360364 ~ 5367143 (-) True pelo
XM_043253097.1 mRNA upstream 85666 5415899 ~ 5419866 (-) True emc9
XM_043254308.1 mRNA upstream 93270 5423503 ~ 5425993 (-) False lsm5
XM_043254413.1 mRNA upstream 147289 5477522 ~ 5486280 (-) True ghdc
XM_043253798.1 mRNA upstream 157567 5487800 ~ 5504829 (-) False stat5b
unassigned_transcript_1919 other downstream 888767 4396412 ~ 4396493 (-) True trnal-uag_71
unassigned_transcript_1918 other downstream 892105 4393074 ~ 4393155 (-) True trnal-aag_72
unassigned_transcript_1917 other downstream 893424 4391754 ~ 4391836 (-) True trnal-uag_70
unassigned_transcript_1916 other downstream 895573 4389600 ~ 4389687 (-) True trnal-aag_71
unassigned_transcript_1915 other downstream 895732 4389446 ~ 4389528 (-) True trnal-uag_69
TU127020 other upstream 60375 5390608 ~ 5396912 (-) False G85779
TU127052 other upstream 92851 5423084 ~ 5426511 (-) False lsm5
TU127053 other upstream 92851 5423084 ~ 5426127 (-) True lsm5
TU127203 other upstream 654756 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 660680 5990913 ~ 6007107 (-) True G85930

Expression Profile