RNA id: XM_043253850.1


Basic Information

Item Value
RNA id XM_043253850.1
length 2787
RNA type mRNA
GC content 0.49
exon number 2
gene id socs5a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10985042 ~ 10996581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGAAAagtgtttggacatgtctgctTTGTGGTAGTGAACCGAAAGGAGAAGATAATCAGAAAGAGAAGATTTTTCCTAAGTGAATTGAGAATTTAATGAGGCGAAAAATCCAGGTGCCCCCACCTCATGGAGAAAGTTGGCAAGGTGTGGAGCAACCTTAAGAAGGGATGTCAATCTCTGCTCCACACAGATGGGGGTTCTCGCATTGAAAGGCCACCACAGCTTCAACCGCAAACAGACACTGTTTGCCAGAGTGGGGACAAGGCCCAGGCAGACATCACTCTGGAGGCTGTTAGTCCCTCTAGCAGTGTGGCAGCACTCCCTCTAGTGGCATGGAGGACCAGTGGGAGTGTGACACGACAGGGCCACAACTGTGTAGTGGATGTACCCCAGATACTAGAGATCACAGTCGAGCAGGATACTGAAGATGCTCGAGCTCCCTTGGGAGCTCGGAGAGACTCTTACTCACGTCATGCACCTTGGAGTGGAAAGAAGAGACACTCGTGTTCCACTAAGGCTCAGAGCTCTCTGGAGACCACAGATCGACGATCAGGTCGGTCTCGGCGCAGGCATGGGGCTGGTAGCAGCCGTGAGGAACTGGAGTCAGGGGGAGCACGCTCCCTACGGCAGCAGATTCATGATACAGTGGGCCTGTGCCTGCCACTGCGTTCATCCTCTCGGAACACTCACCTTCCACCACCCAAACGTAAGATACAAATCACAGAGCTGATGCTAGAGACATGCCCCTTCGCTCCAGGATCAGACCTTGCCCGAAAATGGCACCTCATTAAACAGCACACAGCACCAGTCACAGTGACACAAGTAGATTCATCCACAGATGCTTGCAGTGCTACCTGTGCATCTCCGGAAGATGAAGAGGAGCGCTTGAGAGAGAGAAGACGACTCAGCATTGAGGAGGGTGTTGACCCACCTCCAGATGCCCAAATTCACACAGTGGAGGCTATCACAGCGCCTCTGGCTTCCCTTTATAAACTGGGACCTAAATTGGCCCCTGGAATGGGTGAGGCCACAGGAGATAGCCGGGGGGCAACAGCAGCTAACTGTGACTCTGAGGATGACGATACCACCACTCTTTGCTTGCAAGCTCGCAGGCCCAAGCAGCGGCACGCTTCGGCGGAGGGCATCCTGAGCAGCAAGCAACAGGGGCCTTGGAAAGTACACACTCAGATTGACTACATACACTGCTTGGTTCCAGATCTGCTACAGATCACAGCACTTCCCTGCTACTGGGGTGTGATGGACCGTTATGAGGCTGAAGCACTGCTGGATGGTCGGCCTGAGGGAACCTTTCTCCTGCGAGACTCGGCTCAAGAAGACTACCTGTTTTCTGTTAGCTTCCGCCGCTATGGCCGTTCGTTGCACGCTCGCATTGAGCAGTGGAATCACAACTTCAGTTTTGATGCACACGACCCTTGCGTGTTCCATGCAGCCACCGTCACGGCACTCTTGGAACACTACAAGGACCCTAGCGCTTGCATGTTCTTTGAGCCATTGCTCACTGTTCCTCTGCACCGGACTTTTCCATTTGGCCTGCAAAGCCTGGCTCGATCAGCCATTTGCGGTGGGGTCACCTACGATGGCATCGGGGCACTGCCACTGCCCCCTGCTCTGCAGGACTACCTCAGGGAGTATCATTATAAGCAGAGGGTCCGCGTACGCTGGCTTGAGAGAGAACCAGTCAAGGCCAAGTGAGGCAGGGCAGATACTTCTCAGCTCTCCAACAGGAGTAGTCCATTCAGCACTTTGCAGAGGTGGaggaattagttttttttggggtgggggGATGTTCAGGGTTGAAAGGAGGGACCTGAAACTGAACACTATATAAGCTCCtatcatttttttatcactcttaacaaacaaaagaaattacATATACAGTGGCTCTCCAGTGTGCACATTTCATTACAGCTTCTGGAATAGAAAGCAGCAGCCGAGGTCTCATTTTCCCTTCTCCCTCAGTTTCCATGGCTATGGGGGAATCTGCAGATACAGATATTTTCATACCCCTCCACTCTTTCACTGCTTGACTTTGTGGTTTATAGccatttcactttatttttgttgtacCGTTTACCTGCTCTCAAATCCCTTACGttaaatatgcattgttaaTGTTCAAAGTAACATTGCGGACAAATTTTGAGAGAAGGGGAAATGAAGGGTGATGTTCAAATATTGCTTTCCCAGCTTCTTTCATCATCCTTAGCTTTTATGGTGCTCTGTCAGTGGTTCCTATGGTAACATTCTGCGCTCATTCCGTTGTTAAAGGAGGAGGCATTCTAGAGCAGGACATAGAAAGGCTTTCATCCTGCTCATAGAGAACGAGACGAAGAAATCATGAAAGATGGATTGACTTTAAACTATGTGTCCAGACAGCTTTTGGGAATGCGTTGCAGTGGAGAGAAGGGTTCTATGGCATTCTGCTTCCAGGAAGCGATAAGATGTGCACAACGTGGCACGGTGTGATGTGAGAGTGCtcggttttcaaaaaacatagtTACTCACACTCTGCGTTCTGTTGCTGTCAATGTTTTGTAATCATTAATTCCTACCACTAATTGCACAGGGGGGTGACTAATTCTGTATCGtcttttttgtattgatttgaATGGTCTATCAGTGCCCTGGAGGTTGGGCGCTGGTTGAGAGcactttaactttaactgtGCTTATGTTAGTGGGTGAAGCAAAGGCAATACATTAACCTGCTACACTGGGACCATTGCTTTTAGACATAAACACCCTCCTATATAGGAATAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129351 lncRNA downstream 88895 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 90325 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 120446 10816561 ~ 10864596 (-) False G87376
TU129316 lncRNA downstream 120446 10817958 ~ 10864596 (-) True G87376
TU129332 lncRNA downstream 180304 10793063 ~ 10804738 (-) True G87388
TU129382 lncRNA upstream 8427 11005008 ~ 11006938 (-) False cript
TU129386 lncRNA upstream 74668 11071249 ~ 11071765 (-) True G87429
TU129411 lncRNA upstream 112315 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA upstream 127866 11124447 ~ 11126279 (-) True G87450
TU129359 lncRNA upstream 262436 11259017 ~ 11298534 (-) True G87409
XM_043254470.1 mRNA downstream 47029 10931862 ~ 10938013 (-) True msh2
XM_043253414.1 mRNA downstream 53885 10918779 ~ 10931157 (-) False fbxo11b
XM_043253416.1 mRNA downstream 53885 10918779 ~ 10931157 (-) False fbxo11b
XM_043253417.1 mRNA downstream 53885 10918779 ~ 10931157 (-) True fbxo11b
XM_043253419.1 mRNA downstream 69158 10900253 ~ 10915884 (-) False foxn2b
XM_043253701.1 mRNA upstream 8425 11005006 ~ 11006954 (-) True cript
XM_043253699.1 mRNA upstream 15891 11012472 ~ 11027430 (-) True rhoq
XM_043254163.1 mRNA upstream 47695 11044276 ~ 11045889 (-) False LOC122355648
XM_043254162.1 mRNA upstream 53098 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA upstream 53098 11049679 ~ 11054805 (-) False kcng3
XR_006252200.1 other downstream 1495730 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1495730 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1495752 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 1495752 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 2106930 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 46307 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 324842 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 836298 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 952690 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1652802 12649383 ~ 12675472 (-) False prr15lb

Expression Profile