RNA id: XM_043253869.1


Basic Information

Item Value
RNA id XM_043253869.1
length 1657
RNA type mRNA
GC content 0.41
exon number 2
gene id hcar1-4
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11082205 ~ 11084036 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAATACTTTTTAAGAGTACATCACTGCCCTGAATTGACGTCACATTTTAAGAATTCATCTCGACAAtgtttcgtttgtttgtttgtttctaaacGCAGCTGAAGATGTGATATGATTAAAGTTGCTTATTTGCGATCtaaataatctaataataacaGATAGCAAACGCAGAGATCATTTGATTTTCCTTTACTCCGCCCTCAGTGGTTTCGTTTCCCACGAGATCACCGCAACTTACAAAATCGTTCTCTAACCGCCTCGCTAACGACAGGAACTCCTGCCTTGATCATTTTGgTTACTTTTCACCATGAGTAACATCACCTCCTGCACAGAACCCCAGACCCTTGTTACCTCAATTTTAAAGCCTGTTCTCATTTTGGAGTTCATCTTTGGGTTGCCTGGAAATGTGTTTGCTCTGTGGATTCTGTTCTTCAAGTCTCCATGGAAAGCCTGCAATGTGTATCTATTTTGCCTGGTGATATCTGACCTCCTACTCCTCACCGGGCTGCCTTTCCGCATAGATTATCTCTTTCGTGGTGAGGACTGGATATTTGGCGAGTCCTTTTGCCGCCtaattttatatatcatatcaGTAAACTACTCAGCAAGCATGGCTTTCATGTCAATTTTAGCTGTGGACCGCTTCTtcaggatccttcacccacacCATCGCATTTGTCGAATGAATGTGAGACAAGCTTTGATGTTGGCTAGCACGGTTTGGATGGTTGTTCTAGCACTTCGCCTTCCAACCGCTCTGGACCTGGTTCTCACACCACAGGAAAACTCTTCAAAGTTCACGTGCCACAGTTTTCTCTTATGGACATTGCCGTCGGTTCAAATGAGGATTTATACTTCAGTTCAGCTGATAGAGGTCCTGTTAGCGTTCACACTGGTGGTCTTCTGTTTTGCAAGGGTTTACTTTCACGTCCACGGTCGCCTGTCTAAGGGGGCACACCGCAGGGTGAAGCGGGCAGCAAGACTGCTTCTGTTTCTCGtaatcatatttgttttgtgtttcctgCCTACAGTCACTTTTGGCATCATCCTTCAAGTGTTTTCCTGTTCGGAATTCCTCACGGCGTGTTTTCATGCTTCTTCAGCTTTAACCTACATGAACAGTGCACTGGATCCAATCATCTACTGCCATGTCAATGCTTGGTTTCGTGACACCCTAAAGGGCAAAACCAACTCATTAGGGCTCACGAAGTTCAAGATGAGTGCGAAAACGAACAGAAAACGTTAATCAACCTGGGAAACGGTGCACTGGGGGGTTTCAAAACATGTCTTAAAGCTATAGTTCACATTAAAatccaaatttatttattacttaccTTCACATGTTGTTGCATACCAGTATGACGTTCTTACACTTAAGATAAAGTTTTCTTAATATCTTTTTCGTGTTCTACAACAGTCATACAGGTTTTTAGAACAACGTGATTGCGTGAAACGAAAATATTATGTTGCACAATATATTCTTTATGATACGGTACACCTTTCTATAGTTTGTTGTCATGTTTTCTGCCTGTAACATGCATcaataattgcttttttttgtattattacacaGACGTACAATCTGTACCgcgcctttttttatttagcatttttcagtaaatgtgtgacacacaataaaatacagcagaaaTGTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129386 lncRNA downstream 10440 11071249 ~ 11071765 (-) True G87429
TU129382 lncRNA downstream 75267 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 186058 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 187488 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 217609 10816561 ~ 10864596 (-) False G87376
TU129411 lncRNA upstream 24860 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA upstream 40411 11124447 ~ 11126279 (-) True G87450
TU129359 lncRNA upstream 174981 11259017 ~ 11298534 (-) True G87409
TU129455 lncRNA upstream 187705 11271741 ~ 11273302 (-) True G87482
TU129457 lncRNA upstream 194288 11278324 ~ 11283586 (-) True G87484
XM_043254162.1 mRNA downstream 27399 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA downstream 27400 11049679 ~ 11054805 (-) False kcng3
XM_043254163.1 mRNA downstream 36316 11044276 ~ 11045889 (-) False LOC122355648
XM_043253699.1 mRNA downstream 54775 11012472 ~ 11027430 (-) True rhoq
XM_043253701.1 mRNA downstream 75251 11005006 ~ 11006954 (-) True cript
XM_043254109.1 mRNA upstream 35382 11119418 ~ 11122838 (-) True zfp36l2
XM_043253246.1 mRNA upstream 133256 11217292 ~ 11219552 (-) True six2b
XM_043254472.1 mRNA upstream 240365 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 240365 11324401 ~ 11331786 (-) False sncgb
XM_043253747.1 mRNA upstream 260423 11344459 ~ 11374806 (-) False bmpr1ab
TU129388 other downstream 36323 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1592893 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1592893 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1592915 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 237387 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 748843 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 865235 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1565347 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1586589 12670625 ~ 12675472 (-) False prr15lb

Expression Profile