RNA id: XM_043253872.1


Basic Information

Item Value
RNA id XM_043253872.1
length 3514
RNA type mRNA
GC content 0.44
exon number 26
gene id adam11
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5564608 ~ 5600663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATCGCCGCGGAACGGGATGAGGTGGTAAATGTCGCGTTTCGCATCTTTTTGCTCCGGTTGAAGCCGCAGGAGTATGTGATCATGTTGGCGACGCGCTGCCTCCTCCTGTGGGCTGCGGTCACCGCGCGACTCGCCGTGACAGGCTGGGGCAGCAGCATCAAGCGGGACGGAGCGGAACGGGAACGCGAACAGAACGCATATGCAGAGGAGCTCACGCAGCCCCAGCGGCTGCTGCAGCGGACTGACGCGGAGGAGGAGCTGCCGCACGGACACTTGGGTACTCTAGTAAAGATTGATGCTGATGGAGCGCATCCCATCCATTTGGCTCAGATCTCGTTCCAGGTGACGGCGTTTGGAATCCCATTTGTTCTAGACCTGGAGCTTAATCATGATCTCTTATCGTCTAACTATGTTGAACGCCACTTCGATGAGGATGGGCGACCTTTTCAGAGTCTGGGAGGAGAGCACTGTTACTATCACGGTCATGTGAGAGGAGTTCAGAGGTCATGGGCAGCTCTCTCCACCTGTCATGGCCTACAAGGGATGTTCTCAGATGGCAACTTTTCATACGGCATTGAGCCCTTGCACAACAGCAGCGATCAGGATGCAAATACTCATGTTGTGTACAGAACAGCAGACATCCGATTGAGACCACACTCATCAGGAAGCACCAGGAACAGCAGTGACTCTGACATTAACAATGACTATCCTGTTTCTATGGAAACGAACGAGCCGGAGCTCACAGATGGGCTGAGACGGGCAAAAAGACAGGTTCGGAGGGGTCCACGGACCGTTCAGAGTGAAACAAAGTATGTAGAGTTACTAGTGGTCAATGATTATGAACTGTTTGTACAGATGAGAAGATCAACCCCTCAAACAAGGAACTTTGCCAAAGCTGTAGTGAACATGGCTGATGCTATTTACAAGGAGCAGCTGAACACTAGAATAGTGCTTGTCGCCATGGAGACATGGTCAACTCAGAACATGGTTTCTGTTGGTGATGACCCTTTGGTGACCCTGCGTGACTTTATGAAATATAGGAAGGAAAATATCAAAGAGAAGAGTGATGCAGCTCACCTGCTTTCGGGACGCACATTTCAGAGCAGAAGCAGTGGCACTGCCTACATTGAAGGGATCTGCTCACCAACACGAGGAGGAGGAGTCAATGAGtATGGAAACGTGGGGCCCATGGCTATAACCTTGTGTCAGAGTTTAGGACAGAACCTTGGTATGATGTGGAATAAAGATCGTGCTACTGCAGgaGACTGTAAGTGTCCAGATCCATGGTTAGGCTGCATCATGGAGGATACTGGATACTATCTACCCAGAAAGTTTTCACGGTGCAGTATAGAAGAGTACATTCAATTTCTTCAGCAAGGAGGAGGGAGTTGCCTCTTCAATAAACCTAATAAGTTGTTGGATCCTCCTGAATGTGGCAATGGCTTTGTGGAACAGGGAGAAGAATGTGACTGTGGCTCCCAAGTGGATTGCTCTCGTTCCGGGGGTGCATGCTGTAAAAAATGCACTTTGACCCATGATGCAATGTGTAGCAATGGACTCTGTTGTAGCCGTTGCAAGTATGAGCTGAGAGGTGTGATCTGCAGGGATGCAGTTAATGACTGTGATGTGCCGGAAACATGCACTGGCGATTCGAGTAAATGTCCACATAATGTCCACAAACTGGATGGTTACATGTGCAATGCTGGACTGGGGCGCTGTTATGGGGGTCGCTGTAAGACCAGGGATGCCCAGTGTCAGGCGCTCTGGAGCCACAATGCAGCAGATCGCATGTGCTATGAGAAGCTGAACATTGAAGGTACGGAGCGTGGCAACTGTGGTCAGGACAGCAGCTCACACAGCTGGATTCAGTGCAATAAACAGGATGTGTTGTGCGGATTTTTATTATGCACTAATATCACAGCGAAACCACGGTATGGAGACTTAAATGGAGAAATCACAAGTCTTACCATCTACCACCAGAACAAGTACCTGGATTGTCGTGGGGGTCATGCAGTGTTAGAAGATGGCACTGATCTCGGGTACGTGGAGGACGGCACGCCGTGTGGTCCTAATATGATGTGCCTGGACCATCGCTGTCTGGCGGTCACCACCTTCAACTTGTCGTCCTGTCCCGGGTCATCGTCTTCTCACGTGTGCTCTGATCATGGGACATGCAGTAATGAGGTGAAGTGTATCTGCGACGCAGACTACACTGGGAAGGATTGCAGTGTATACGACCCTATTCCAGACCCTCAGCCTCCAGACGGTCCTGAGAAGTATAAAGGTCCAAGTGGTACAAATATCATTATTGGCTCAATAGCAGGAGCAATACTGCTGGCAGCTATAGTATTGGGAGGAACAGGCTGGGGCTTCAAAAATATCAGAAGAGGAAGGTATGACCCTGCCCAGCAAGACATGATGTGATGTTATACACGCATATCCACCTAACACATATTGCACCAGCTGTTTTCACATCTTCGCCTGCCCATTTAGTTTcgagttttaatttatttattttgtttaatgtttgtgttacCTTCGTTACAAactaatttcaatgcaccagtCAACACATATCACATTTGTTCCCAAACTCCGTTACGTAGTTGTAATGCACACCTTATTGGATCACCAGTACAAAAACATTGGGATGTTTAACTCCTTTGTTAGTAAAACaatgtttgaaaaatgattttgtatgaAAGACCAGTTTAGTTGGTATTTATAATAACACTAGTGTTGTCAGCCACTATTAATATGCACTAATTGAGTAtgattttatatcaaatatctTGTCATTTTAAGATTCAGATTGTACATTTTTGATGCTAATACAGCCTTCTACACAAATATACTTTGGTATATATGGGCAAATAATGTCTTGAATTATTTGTTTGATCtttcaataatacatttacacaatacatgtaattatatatataaaaaaagtctaaaattaCTGAATTAATTAATGTGGAAAGTCATTCCTTTTATGCAGTGTATGTTTTTTCAGGTCATATTGAAATAACAATTAAGAAAGCAAGCAAGCCACATAAACCAcaaatttattaagaaatattacacattttattaaatgatttctttctttaataaaaacatggttttaaattaactgaatagttttttttccagtgtccTCTGCTTCACTTTCTGTCCTGTTAATCCCAGCTTGTGGACCTTTCCaggcaaaaaacaacaaaaagaattattaaagaattctaaattaataaaggattaaaaaagaagaatgtaAGAAAACCCTTAATCCCTCGATGAGCAATGGTTACATTTTTGGCTTTCAAATTCTCTAAATTAcaagatgtatatatatatttttctaactGCAGAATAGGAATGACCCTTGGCATTTCAGTCACATGCTTCAATTACTTCTTGATTGGAAGTTACTCATATGGCCTTCATTTtacaggcaaataaaaaaatacaaacaacaaacgTTGTATCATTCCACATATTGATTCTCCTCCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127056 lncRNA downstream 142826 5423084 ~ 5426511 (-) False lsm5
TU127055 lncRNA downstream 143210 5423084 ~ 5426127 (-) False lsm5
TU126767 lncRNA downstream 1116061 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1155975 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 1157137 4411340 ~ 4412200 (-) True G85569
TU127129 lncRNA upstream 126846 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 210199 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 219891 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 236914 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 238101 5838559 ~ 5838957 (-) True G85893
XM_043253256.1 mRNA downstream 28901 5535173 ~ 5540436 (-) True foxh1
XM_043253798.1 mRNA downstream 64508 5487800 ~ 5504829 (-) False stat5b
XM_043253797.1 mRNA downstream 64508 5487800 ~ 5504829 (-) True stat5b
XM_043254413.1 mRNA downstream 83057 5477522 ~ 5486280 (-) True ghdc
XM_043254308.1 mRNA downstream 143344 5423503 ~ 5425993 (-) False lsm5
XM_043253254.1 mRNA upstream 2223 5602681 ~ 5613207 (-) True dbf4b
XM_043253255.1 mRNA upstream 3812 5604270 ~ 5613207 (-) False dbf4b
XM_043253920.1 mRNA upstream 20680 5621138 ~ 5626937 (-) True klhl11
XM_043254031.1 mRNA upstream 28288 5628746 ~ 5658945 (-) False aclyb
XM_043254030.1 mRNA upstream 28288 5628746 ~ 5658945 (-) True aclyb
TU127052 other downstream 142826 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 143210 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 172425 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 172425 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 172425 5390608 ~ 5396912 (-) False G85779
TU127203 other upstream 384531 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 390455 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 451265 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 463840 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 1069861 6670319 ~ 6671247 (-) True G86049

Expression Profile