RNA id: XM_043253874.1


Basic Information

Item Value
RNA id XM_043253874.1
length 6454
RNA type mRNA
GC content 0.38
exon number 11
gene id ppp1r16a
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5543755 ~ 5564754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgagtgtagCGCCGACTGTCGGGATGCGTTGAGCGACTACACGGACCGTAGGGAGCAACGGCTGTTATggagattattttatttccctTGAAAGCTAACGGAGAGAACTTAAGCGTGATTAAACGGACATGAGTTTACCGATTGAGTTCAACTGAAGCAAAAGAACTTGTCTTCCTGGTCTATATAGAAAAAGTTATTAAGAATATGATCCGTCATTGGCAGTCATCTACATCTCTACATCACCCCATTGGATCTCCAGTTTGTTTGCAGCTCTCATCAGACGTTTGGATGCCAGAATTGCAAGTGTGAAAGAGTCGAATGCCTATGAGAGGAGTCAGCAGAAGATCCAAGCAGAAGCCACAGTCTTTGTGGTGTCAGAAGGAATTGTGAAGGAGTTGATAGCATTGACTTGAAAGATATGGCAGAGCATGCTGAGCTGCTAGCGGAGATGGCAACTATCGGCCGTCTCTCGGCCACAGAGCGCCTGAAGCATGCACAGAAGAGACGGGCGCAGCAGCTGAAAGGCTGGGCTCAGATGGAGAAGGACAGTGCCCGTGGTCAAAAGGGCAATCACAAGGGAGATGGGGTGAAGAAAAGCAGAAGGGTAACCTTCAACACCAGTGTGACTTTGCTGGAGGCTGCAGCCAGGAATGATGTAGAGGAGGTACGACAGTTGCTCAATAATGGAGTCAGTCCAGACTTGTTCAACGAGGATGGGCTCACTGCACTTCATCAGAGCTGCATAGATGATTTTTTGGATATAGCGCGTTGTCTTCTGGATGCGGGTGCAAACGTGAATGCGTGTGACAGTGAGTTATGGACCCCTTTACATGCAGCGGCCACCTGCGGACACACTGACCTCGTCCAGCTGCTGATAGAAGCAGGTGCAGACCTGTTGGCGGTGAATGCAGATGGAAACATGCCATATGATCTGTGCGAGGATGAGGCTACACTAGAACTCATAGAGATGATCATGGCAGAGCAGGgGATTACTCAGGAGAGAATTGATGAATGTCGTGGAGCCAAGGAGAGAGCAATGTTGTCTGACCTTCAGGAGCTGGTTGCGAGCGGAGCTGATCTGAATGTGAAGGACGAGCAGGGGGCCACTCTGCTGCATGTAGCAGCTGCTAATGGATACACGTCAGTTGGGGAACTGTTGTTGGAGCAGAGAATATCTCCAAACGACAGGGACGTTGACGGGTGGACGCCACTCCATGCTGCTGCCTGCTGGGGACAGaTCCAGATGGTGGAGCTGTTGGTAGCTAATGGTGCGAATTTAAACGCCAAGTCTGAGCTGGATGAGACGCCTCTTGATGTATGCACTGATGAGGAGGTCCGGGCCAAAATGATGgagctgaaacacaaacacgaTGCCATCATGAAGGGTCAGGACAAGCACAAGAACACATTGCAGAGACGAGTGTCCAGCACGGGCAGCAGAGGtaaaGTAGTGAGGCGCACCAGCGTGAACGAGCGCAGCAGTCTGTACCGCAGAGAGCATCAGAAGGAAGCCAAAGTGTGGCAGGAGAGAGGAAGACAGACAGATGCtctggatgatgatgaagacCGACAGACTGATGCTGAGCTAAACCTGCACGCTGCACTGGTGTCTGGTTCTAATGCGAGCCCTGTTCCTCCATTAGAGGTCGGCGAAGTGGAAAATGGAGCTCAAGTTTTGGGAAACGGCAGTACGGCTTCGTTTTCTTCTTCACTTCCAGGAGAACTCCAGGGTGGGGGGCGCATGGATCGCAGCGCCTCCTATCAGCTCGCTTCGGCTGCCGTTGGAGGAGACAGCATGAGCAGAGAGAGATCTCACCACACGCTCGCAGATCTCAAACGCCAGAGAGCTGCAGCTAAATTGCAGAAACATCCAGCACCTCCTATACCCCTGTCTGCAGACCCTCAAGATGAGGTCGTTCCTGAAGTACCCCAGGAGTCTCCTGAATCAGTACAACAGGATGTGTCCCCCAGTGCAGTGTACTTTACCCAGGCTAGCGGAGATCCACCTTTGCTGAAGCTGAGAGCACCAGAAGAAGACACGACTAATACGAAAGAGCCATGCTGTGGACTCATGTAGAAGCAGCAGACGAACAATGTTTGGTTTTCTGTGGACTACGTGGACAAACTAAAATTGTAAGGCAGGTACGTGGAACTGAATTTTGTCCAAGTCACGCTTTCTCTCTCAATAGCACATAGAGCGAGCGAAGTCACATTTTGTCACGTGAAGATAAGTTTTGAAGTCACTcaagaaatcataaaaaagaaGACCAAAGTGCACACATTTAGATAATTTCATGGATTAGTTGCATTATTGCggtattttaatcttttaagatcatataattgtattttaatcgATATGGTCGTTAAAGTTTCAAAGTATTGACTCAACTGTTCAAtacatagagaaaaaaaaactgacactgAGCACTTTACTTGACCAGACTTTCAGCAATCTTTATAACGTTGATAGATATACACGTAGAAGTATACTGATTACAAATAAGCACATTTGAATTGCACTGATCAAAATAAAGCTGCATTCCATTCACATTTCTGCTATGATCTTACAActagcatttttattcacatCTGCGTGGCACCATTTCACAATGCTTATTGCTTTCAGCAAACTCGTATCCcagcatttatgttttttttcccaccatatttttatttttgttcatgacACTTTGTATCAatagaaacaataaaaacaaaatgaaagacaTTGACAACAAAGGTTAATAGGTCTGAGTACCTTCTGGCAATTTGGTTTAAGAAAATCTCAAATTTAAACGCCTTATTTttgacttaatttaaaaatcgAAAATTTTAACTCACTTTCTtcgtgtatatataaaaaggagGTTACAGCTTTAATACTTACACATCACATTTTGGACAGTGAATTAGTAGCAGAATTTTGACttctttaataatttgattataAAAGCATTGTTTCTAAAACGTATTccaaaacataatttgtttaGTTCAATAAGACTAATTAATGTAATCTTAGTACTCCGGGATTATATGCGCCGTCTTTTTAATCTTTGCTAAAATGCTTCTCAGATCAcatagttttttaaattttatttatttttttagtgcaACTGTATTCTGATTAGCAAAGACTTAGCAAGGAACTGTACATTTAGACACAGTTCAAATTATAAACTGTATGTACAACATCATGTATTCCAGCAAAGTTTATTGTCACTTCATTTTCATGATGACTTAATTGTCATTAAGAAATGGTCATTTAGTGCTGCccatacatgaaaataaaatacttaagcTGTGAACtccaatagttttttttcttttttgattttttttttggtccattggttaaaaaaaaaaaaaaaaagtcaaactaaaTTTTCTTCTTTGAATTCAAATTTTTCCAATAAAATTGGAAGGTATGCAGACATGGTTTTCGATTGGAACAAAGCGTGAttggacatttatttttaaaaccgataggcctattaaaataaatgcaatgcattttttccattttatagaCAGTgaccattttccttttttttttttttaaccgtgACAACAAAGATTGTACTATGGATTGTatggaggtattttttttttagaaatggtCAAAATGTGAATacattatgaatacatttttatatgaatatataaaataaatgtatttttactccTGCTATGGAAACATCTAATTAATTGcacaaaatgtatatgtgtaattaatatttcatacatGTTCTCATGTaagagatattttgagaaactATAGctgaataattataaaaatataaattccttACGAGTTCTCAGTGAAAGCAGTCGGATACAGCCCACAGAAAAGAATTAATGCTTTTTGCACctgtatattaaatgtaaagcatgctagaatttatgatttatcttttttctgattttcaatttaaattttgtataaGGAGAATGAGCTTGGATCTGAATGttaaaaccatttaaagatctgtatttaattttaaaaaggaaaaaggaatgGACACAAAAGTACAAGGACCACCgattgttaacattttacattataatgtagCTTATTTGggtagttttatattttactcaTGATCAATATTCATTGAGATTTAAATGGAATGAGTGATGGAAACACTTTTTCACAATGATTGGCAGAAATAATgactttcaaaaatatcttcagttTAAGCAATTTGGGACTTAATTTACCATCTAATATTTGGACTTTTATTTCTCCACATGAATGCATATTCAAAGtcttatagttttttttttacacattgttTACCTGCTCTGATCACATTTAGTTCTTTGTTTTGATACTCTGTCTTAAAATGTCAAGAAATGTGTCAGTGTTCTAAAtgcaactacaaaataattttgttctATGAGGTTTggcttgatttgtttttttttttaaataataactaaataatcaACAATTCAGCAACATTACATCCACTCTTTATcttacatacatatgtataacCTTATGCACTGTAGTCTATTTGTTTCAAACTATGGTCTGTAAAATGCTTGTATtgatttcattgatttattttttttttgttatttatttaatgaacttTGTAAACAAACAGTTTGTGTGATGTTCAAGATATGTTAGGACATATAGACTCAATGAAAAGCAGATGCTAATCTCAAACATTTCACGTTTGTCAAATATACTGATCATTTTGGAATTACATATAATTGAGTTTATATTTTAGGAACAAAGTACATAAAATTGATATTCCAGAATGCGACATCTCAGCTGAGTAATTTCTAGGTGAAACGGTCCATTTGGATGCTGAGGTCTATATTTAGTATAaattgataaatgtttttttcagggttatttatttttgaatttttgttgtatatttaaaCTGGAAATATCTGTGTAATCTGGACTCTACTatgaaatatgctaatatttcatctTGATATGCAGTGTTTACTATAGAACAGCACTTTTCACATTATACAATgccttaaatgtaaaattctttttttggacatccattttgtacatttctatgTCATCTACATCCTCTGTTAAATGAAACGCTGatgtctgtaaatatattaaagagaCTACAACCAGGTTTGAATAAAATGCAAGTGCATactgaaattaatataattctgtttttaagaaatgattCCTCTCTGGCCTGAACATGAAGtagtttaatgtaataatttttttttaattaaatagttcCTATGCAAACTACACTGACGTTGTACAAGAATAGTTGGAACTGTTCAAAGTAAGACGGGGCTgtgatattcattttataacttgattttgtcattaatcactcacctccacgtcgttccaaacccgtaaaagcctTGTTTGTTGTTTGCGTTGTATTGAACGCAAACAATATAGCTACTTTATTCAATTTGTCTCCCCTGCGTCTCCCTGCGTCACTGTTGCTAAATTTTGCAGAGTATCTGCTGGACACTCTTCTGTGTCTGCTGCGCTACAAGGATATGCATACGCTTTGATTTGAACGAAAACAGTGCAGCTGATAAAGAAAAGTGTACGCCATTTGCTTCCAGCACTCTCTCCAAAAGGCTGTACGGCGATGcggagagacagaggagacaAACCGTTGATTAAAGtctatgttttcatttactttatgtaaaaaaaaatgactctcGTCTCTTCATAAAATTCAAATTGAGCTACTGATGACAGATGGATTATGTCTTgcatacttttctgggccttttCTTGGGAGTCGAGCTGGTTTTCTTATCTtaaattgtctttaaaaaaagcttttcctgagtttgaaatgacatgggaGTGAGTAATTgacaaaactttaattttgaggtggagtaacccttttagtttttttaacaaactacACCATGTTCTCAAGACTTCGATGTCAAATTCATAAAGCTTCCAACAACTCTTTATTGTAAATCTTTTTCTGAAAGTTTGAGTCTAAGTGATGACACAAAGCAGCAAAAGCAGACGAGTAGATGGGGTTTCAGGTTTAGCGTGATGAAGTTGAATGTTCCCAACAACTTATTGTCCCGATTAGCCGCTTTTTAGCAAAATGTCGCTTTAGGTCCAGGACCTAATCAGCTTTGGAAAATGGATGGGATAGATGCTTTGTAGATGGACTGCTGTGTTCACGTTCTCTCCCTTTGGAGGCCTGGCTAACTTTCTCCCACCGTTATAAATCTTCAGTGATTGGCTCATCGGGAATTTAAACAAAGGTGGCTTTTTCTGCATACTTAgttgaaaaacaatgtgagAAATGTTCAAGTCTTTCTTTATTTAAGCTTAATAACTTGCAAGTATCTCGTCAACATTCCCAgtgtttttaagattaaaaaaaaaaaaaaaattacattgcatCTTgtcagaacagaaaaaaaagagatgagttgttttcaacattt

Function

GO: NA

KEGG:

id description
K17458 PPP1R16A, MYPT3; protein phosphatase 1 regulatory subunit 16A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126906 lncRNA upstream 47521 5495107 ~ 5496234 (+) True G85687
TU126904 lncRNA upstream 50821 5491714 ~ 5492934 (+) True G85685
TU126902 lncRNA upstream 58006 5483574 ~ 5485749 (+) True G85683
TU126891 lncRNA upstream 97036 5445407 ~ 5446719 (+) False drosha
TU126873 lncRNA upstream 141043 5397563 ~ 5402712 (+) True G85661
TU126935 lncRNA downstream 36720 5601474 ~ 5602181 (+) True G85713
TU126989 lncRNA downstream 247495 5812249 ~ 5816315 (+) False LOC122355829
TU127011 lncRNA downstream 256677 5821431 ~ 5821687 (+) True G85774
TU127179 lncRNA downstream 393140 5957894 ~ 5958234 (+) True G85905
TU127264 lncRNA downstream 533374 6098128 ~ 6098334 (+) True G85967
XM_043254357.1 mRNA upstream 10848 5510698 ~ 5532907 (+) True oplah
XM_043254437.1 mRNA upstream 67091 5452829 ~ 5476664 (+) True kcnh4b
XM_043254292.1 mRNA upstream 97068 5426581 ~ 5446687 (+) True drosha
XM_043254307.1 mRNA upstream 120338 5420706 ~ 5423417 (+) True psme2
XM_043254199.1 mRNA upstream 131317 5405555 ~ 5412438 (+) True irf9
XM_043253921.1 mRNA downstream 49325 5614079 ~ 5621340 (+) True fkbp10b
XM_043254048.1 mRNA downstream 104146 5668900 ~ 5684328 (+) False si:ch211-217a12.1
XM_043254046.1 mRNA downstream 104154 5668908 ~ 5684328 (+) True si:ch211-217a12.1
XM_043254047.1 mRNA downstream 106597 5671351 ~ 5684328 (+) False si:ch211-217a12.1
XM_043254043.1 mRNA downstream 126604 5691358 ~ 5699906 (+) False kbtbd2
TU126784 other upstream 454117 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 1090480 4452855 ~ 4453275 (+) True G85567
TU126759 other upstream 1124542 4418247 ~ 4419213 (+) True LOC122355720
TU126747 other upstream 1140075 4401131 ~ 4403680 (+) False LOC122355090
TU126733 other upstream 1266370 4275344 ~ 4277385 (+) True ndufa4b
XR_006252205.1 other downstream 322198 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other downstream 322198 5886952 ~ 5943580 (+) False becn1
TU127259 other downstream 531194 6095948 ~ 6096732 (+) True G85962
TU127298 other downstream 650165 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 876067 6440821 ~ 6441526 (+) True G86019

Expression Profile