RNA id: XM_043253884.1



Basic Information


Item Value
RNA id XM_043253884.1
length 1704
RNA type mRNA
GC content 0.44
exon number 9
gene id zgc:171971
representative False

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 1652449 ~ 1658747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCGTGATGCTTCTGCAAGGATGTAGCTGTCAGCTGGAGGAGTTTAACAGACATGGCTTAAGGTGTTTGCACCGGTTTCAAGATGTCTGAACATGGAGATGGGGATGCAGAAGCGAGCTCATCCGCCACTCTCAGACCATCTTTTGCTCTGGGGAGAGCGCTGCCCGGCCGAATATCTCTGAATCCTCCTCCGCCAGGCAGACTGACCTCTCTGCGCTCCAGAGACCTGACTCTGGGAGGATATAAAAAGAAAACCTTTGTACCAAATGTTCACTCTGTTCGCAAAACTAAAGATGAGTTACAGGAGGAGATGCACACTGCGccgaagaaagagagaagagagagggaagacagacaaagagagagacgcCGACGAGAAAAACCTCAGACCATTCAGTCTCACTCCATCTTTGAGCAGGGTCCAGCGGACACCTACAGGAAGCTGGGTAATTGGAGCGGCTCAAACCTGAGCGACTGCGATCCCGCACTCgtgacaaaatgcattaaaaaggaaaagaacaacATCGAGGATGACGATAATGAAATTTTACAAAAACTCCAACGAGACGACTTTTTGGACGATCCCGGATTAAAAAATGATCCCAAGCAACGACCAATCAGACTCCCGCTCTATCAGTCATGCAACTTTTTGTCAACGGATGCAGCGAGTTCGTTTAAAGAGGACACGGCGTCTGATAATGCTCTGAAAGTAGCCAAAGCCGAGCAGAAATACCCTGTGCCAGCGAGGGGCGCGTCTGCATGTCCGCAGCAGCCAACGGTCGGAGAACTTTTCCAACGGCTGAGCGTTTCGGATAAGGAAGAACTGCTGTTTATTCAACTTCCCGATACCATACCTGGTCAACCCAAAACCTTGAGCCCAGAGAAACCCAGAAAGGAAGGCAAGACTGAAGATAAGCGTTCGTCACAAATTAAAGCTCTGGATCTGCCCGAGAAAGCCCCTGTACCTATGCTGTCAGACTTCTCTGAGGGTCTGATTGGAAAATTGCAAATCAGAAAGTCTGGTAAAGTCCAGCTGGTCATGGGAAACGTTACATTAGATGTCTCAGAGGGAGCCGCCTTCTCTTTCCTACAGCAACTGGTGTGTGTGCGGATGTCGGAGGGCCTGACCGGAGACATGACTGTGCTCGGAAACATCACACACAAACTGGTGTGTTCACCCGATTTTGAGACTTTGCTGCAAGAAGCCAAACTGTCATCTGACCCCGGCTCGGCTTCAAAGTCCTGATTTTATCCCACTAGAATATATcgttatatttaagtttttttttatttttatgtaaacattttaaacgtGAAGTTAACGCCCTGTAGTTGACAATTGCATTATAAGATCATATTCTAATAGAGACAActtgatttgtatttaaagaGAGAGTCCATCTAAAAATGCaattgtcatttactcactctacGTGTTAtaagaaaaaagttttgaaaaaaaaaaaaatatcataacaTTTTTCCTCCATAGAATGTAACTATCTGTAATTCGGCACAGTTTACGGAAAAGAGCAGCTCggacattctttaaaatacctGAATTTGTTTTACACAGAATGAAGAAAGCCGGTTTTGGAGAGGTTaagtaaagtattttaaaaatgtaaatcttttgtaaatagCTCCTGTTGCTTTTATAGAAAATGTTCGTGTTTATTTTGTAAGTAAAGACATTGTACAAAA

Function


GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU125824 lncRNA downstream 2315 1649461 ~ 1650134 (-) True G84892
TU125816 lncRNA downstream 24413 1626295 ~ 1628036 (-) True G84884
TU125817 lncRNA downstream 47650 1599857 ~ 1604799 (-) True G84885
TU125814 lncRNA downstream 66499 1585749 ~ 1585950 (-) True G84882
XR_006252202.1 lncRNA downstream 105955 1545553 ~ 1546494 (-) True LOC122355293
XR_006252228.1 lncRNA upstream 51751 1710498 ~ 1737269 (-) True LOC122355537
TU125844 lncRNA upstream 68359 1727106 ~ 1729422 (-) True G84909
TU125854 lncRNA upstream 92655 1751402 ~ 1754571 (-) True G84919
TU125866 lncRNA upstream 306239 1964986 ~ 1969050 (-) True G84928
TU125899 lncRNA upstream 342587 2001334 ~ 2001636 (-) True G84956
XM_043253887.1 mRNA downstream 3687 1642834 ~ 1648762 (-) True ube2d1b
XM_043254000.1 mRNA downstream 10452 1628163 ~ 1641997 (-) True ipmkb
XM_043254467.1 mRNA downstream 278366 1217428 ~ 1374083 (-) False pcdh15b
XM_043253927.1 mRNA upstream 103051 1761798 ~ 1774365 (-) True fam13c
XM_043254429.1 mRNA upstream 131262 1790009 ~ 1796994 (-) True slc16a9b
XM_043254430.1 mRNA upstream 131262 1790009 ~ 1796260 (-) False slc16a9b
XM_043254305.1 mRNA upstream 139311 1798058 ~ 1813172 (-) True ccdc6b
XM_043253621.1 mRNA upstream 155336 1814083 ~ 1947338 (-) True ank3b
TU125629 other downstream 755419 891132 ~ 897030 (-) False dlx4b
XR_006252248.1 other downstream 1292137 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 1292137 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 1292137 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 1331189 319330 ~ 321260 (-) True G84521
TU125823 other upstream 212026 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 834963 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 1109161 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 1432038 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 1599784 3258531 ~ 3299688 (-) False G85366

Expression Profile


XM_043253884.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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XM_043253884.1 Expression in each Bioproject

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XM_043253884.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.