Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043253887.1 |
| length | 1076 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 7 |
| gene id | ube2d1b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056710.1 |
| NCBI id | CM032079.1 |
| chromosome length | 20499150 |
| location | 1642834 ~ 1648762 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0035519 | protein K29-linked ubiquitination | biological_process |
| GO:0070534 | protein K63-linked ubiquitination | biological_process |
| GO:0085020 | protein K6-linked ubiquitination | biological_process |
| GO:0031398 | positive regulation of protein ubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0070936 | protein K48-linked ubiquitination | biological_process |
| GO:0044314 | protein K27-linked ubiquitination | biological_process |
| GO:0070979 | protein K11-linked ubiquitination | biological_process |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| id | description |
|---|---|
| K06689 | UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125816 | lncRNA | downstream | 14798 | 1626295 ~ 1628036 (-) | True | G84884 |
| TU125817 | lncRNA | downstream | 38035 | 1599857 ~ 1604799 (-) | True | G84885 |
| TU125814 | lncRNA | downstream | 56884 | 1585749 ~ 1585950 (-) | True | G84882 |
| XR_006252202.1 | lncRNA | downstream | 96340 | 1545553 ~ 1546494 (-) | True | LOC122355293 |
| TU125700 | lncRNA | downstream | 460702 | 1179577 ~ 1182132 (-) | False | G84795 |
| TU125824 | lncRNA | upstream | 699 | 1649461 ~ 1650134 (-) | True | G84892 |
| XR_006252228.1 | lncRNA | upstream | 61736 | 1710498 ~ 1737269 (-) | True | LOC122355537 |
| TU125844 | lncRNA | upstream | 78344 | 1727106 ~ 1729422 (-) | True | G84909 |
| TU125854 | lncRNA | upstream | 102640 | 1751402 ~ 1754571 (-) | True | G84919 |
| TU125866 | lncRNA | upstream | 316224 | 1964986 ~ 1969050 (-) | True | G84928 |
| XM_043254000.1 | mRNA | downstream | 837 | 1628163 ~ 1641997 (-) | True | ipmkb |
| XM_043254465.1 | mRNA | downstream | 268750 | 1217427 ~ 1374084 (-) | False | pcdh15b |
| XM_043254464.1 | mRNA | downstream | 268751 | 1217428 ~ 1374083 (-) | False | pcdh15b |
| XM_043254466.1 | mRNA | downstream | 268751 | 1217428 ~ 1374083 (-) | False | pcdh15b |
| XM_043254467.1 | mRNA | downstream | 268751 | 1217428 ~ 1374083 (-) | False | pcdh15b |
| XM_043253884.1 | mRNA | upstream | 3687 | 1652449 ~ 1658747 (-) | False | zgc:171971 |
| XM_043253882.1 | mRNA | upstream | 3687 | 1652449 ~ 1658621 (-) | True | zgc:171971 |
| XM_043253885.1 | mRNA | upstream | 3687 | 1652449 ~ 1658283 (-) | False | zgc:171971 |
| XM_043253927.1 | mRNA | upstream | 113036 | 1761798 ~ 1774365 (-) | True | fam13c |
| XM_043254429.1 | mRNA | upstream | 141247 | 1790009 ~ 1796994 (-) | True | slc16a9b |
| TU125629 | other | downstream | 745804 | 891132 ~ 897030 (-) | False | dlx4b |
| XR_006252248.1 | other | downstream | 1282522 | 340273 ~ 360312 (-) | False | prr12a |
| XR_006252247.1 | other | downstream | 1282522 | 340273 ~ 360312 (-) | False | prr12a |
| XR_006252246.1 | other | downstream | 1282522 | 340273 ~ 360312 (-) | False | prr12a |
| TU125247 | other | downstream | 1321574 | 319330 ~ 321260 (-) | True | G84521 |
| TU125823 | other | upstream | 222011 | 1870773 ~ 1947412 (-) | False | ank3b |
| unassigned_transcript_1807 | other | upstream | 844948 | 2493710 ~ 2493791 (-) | True | trnal-uag_3 |
| TU126277 | other | upstream | 1119146 | 2767908 ~ 2781353 (-) | True | G85232 |
| TU126462 | other | upstream | 1442023 | 3090785 ~ 3092413 (-) | False | LOC122355711 |
| TU126480 | other | upstream | 1609769 | 3258531 ~ 3299688 (-) | False | G85366 |
