RNA id: XM_043253924.1


Basic Information

Item Value
RNA id XM_043253924.1
length 1342
RNA type mRNA
GC content 0.43
exon number 9
gene id rsl1d1
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8517178 ~ 8520053 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTTCTTGAAGTGAAACATTCCATTTCCccatatatttttcaaaataaaagttcttgtgACGTTTACTTGGGAAATACGCATGCGCTCTTGACTTTCTTCACACACGTGCAGCATGGAGTCCCCACGAGATGGATTGGAGCTCGATCGGTCTCAGGTAAATAAAGCTGCACAGGCATTACGGGCATATCTAAAGATGAACTCGTCCCAAAAGCTCTTTGAAAATGATGGCCAGGCCATCTCTCTACTGTTAACTCAATGGAAAATCCCTAGAAAGGAGCAAACCATTCGCATTCCTTTACCCAATGGGCTGAGGACCGAATCAGGAGACGTGTGTCTTTTCACCAGAGATGAACCCAACATGACCTCAGAACAGACCGTGAGATTCTACAAAAAGTTACTTGCGTCGAAAGGGGTCAAAAATACCATAGAGgTGATTCCCTTCAAGGTGTTAAAAACTGAGTATAAGCCCTTTGAAGCCAAAAGGAGACTCCTGGGCAACTTTGATTTGTTTCTGTCAGACGCACGCATCCGCCGCCGTTTACCCGCGCACATCGGAAAGCATTTCTATGAAAGGAAGaaggctCCTCTGTCGGTGGATCTAGAGTGTAATCAACTAGCCAGAGACATGGAGCGCCTCATTCAGGGCACAAGCCTAtctgtttcaaataaaggcTCTTGTTGCATGGTACGTGTAGCGCATTCTGGCATGACAGCAGATGAAATAGTTGAGAACGTGATGACAGCCGTTTCCACCATCTCCTCGAAGTTAGCATTGACaggaaaaaacatcaaaatcatcCATTTGAAGAGTCAGACCTCGGTCGCGCTGCCCATCTACACTTCTGATCTGAGTCACCTCGCGTTGGTGGAGGAGGCCAGGAATGAAGCCCGCGCCGCAAAGggAGCtcaaaagaggaagagagaaatgaagaaaacagaAGTGTCAAAGCTGAGAATTAAACAAACCGAGGAAGAGAAAGACAGCGAAGAAGAGGAAATTCCACAGCTGGTGCCTATCAAGATGCCAAccaaaaaaccaaaacagatGaccATATCTAAAAAAGGACTGAAAAAAGTACAGAAGCCTGCTGCCGGCAAAGgaataaagaaaactgtaaaagacACAAAACTGAGGAAGAAAACACCAAAGGTCACCGCACGTGatctaaagaaaaaagtaaaaaaaactaataaaattaaattgtaaattgcTATCTCATCCTGTTAACAGTTTGTGGACATATATGGACAGAAATTTGTATTACGTGTTATAAGGTTCATGtgagcattttttatttctgatgcGTGTGAACAGTCAATTAAAAGATTTCTAAATCTGA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14775 UTP30, RSL1D1; ribosome biogenesis protein UTP30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128374 lncRNA downstream 3933 8511635 ~ 8513245 (-) True LOC122355061
TU128139 lncRNA downstream 172569 8344336 ~ 8344609 (-) True G86608
TU128137 lncRNA downstream 177363 8339456 ~ 8339815 (-) True G86606
TU128132 lncRNA downstream 178478 8334407 ~ 8338700 (-) False cpped1
TU128087 lncRNA downstream 226768 8290080 ~ 8290410 (-) True G86576
TU128385 lncRNA upstream 15920 8535973 ~ 8538206 (-) True G86775
TU128416 lncRNA upstream 77341 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA upstream 103244 8623297 ~ 8626329 (-) True G86807
TU128431 lncRNA upstream 107041 8627094 ~ 8630207 (-) True G86809
TU128455 lncRNA upstream 155593 8675646 ~ 8747077 (-) True G86825
XM_043254353.1 mRNA downstream 1995 8514713 ~ 8515183 (-) True LOC122355801
XM_043253017.1 mRNA downstream 3913 8511403 ~ 8513265 (-) False LOC122355061
XM_043253016.1 mRNA downstream 3914 8511403 ~ 8513264 (-) False LOC122355061
XM_043253993.1 mRNA downstream 5964 8417232 ~ 8511214 (-) False snx29
XM_043253992.1 mRNA downstream 5965 8417232 ~ 8511213 (-) True snx29
XM_043253923.1 mRNA upstream 447 8520500 ~ 8528474 (-) True gspt1
XM_043253925.1 mRNA upstream 8692 8528745 ~ 8531253 (-) True dmc1
XM_043253014.1 mRNA upstream 11931 8531984 ~ 8534641 (-) True tomm22
XM_043253405.1 mRNA upstream 21166 8541219 ~ 8549833 (-) True tmem184ba
XM_043253403.1 mRNA upstream 21166 8541219 ~ 8549831 (-) False tmem184ba
TU128131 other downstream 157198 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1128268 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1412960 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1845931 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2443746 6064298 ~ 6073432 (-) False LOC122355418
TU128398 other upstream 90499 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 162999 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 167445 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 355564 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 961506 9481559 ~ 9489290 (-) False ormdl3

Expression Profile