RNA id: XM_043253935.1


Basic Information

Item Value
RNA id XM_043253935.1
length 2321
RNA type mRNA
GC content 0.42
exon number 11
gene id acbd4
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7174618 ~ 7182834 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACTGAACCAGGAAGTGAACTCCTGTCCGAAATTTCAATAGGCGAAagatccttttttttctttctttttttttttttttgactgtacAAGATGCACAGATATTGTCTTATTAGTGATTAGGTATAATGGTAGCAGGATTACAGGGCAGGTTGTCCAGTTAATGAACATTCGGCTGCAGGAGAGTGGGGAAAATAGACACCATACGATATGCCAGCTCTTACAATGTCAGAGATCGAGGACTGTCAAAGACGCTTTCAGGCGGCTGTCGACGTCATTCAAAGCCTACCCAAAAATGGTTCCTACAGACCCTCTTATGAAGTGATGCTGCGGTTTTATGGTCTATACAAACAGGCAGTCTGTGGCCCATGTACAGTGTCACGCCCTGGATTCTGGGACCCTGTAGGCCGTTACAAATGGGATGCTTGGAACCAGCTTGGAGATATGAGTAGAGAGAATGCCATGACTGCTTATGTGAATGAAATGAAGAAAATTGCACAAGAGgtCATAGACACCATGCAAATCAATGAGAAGACTGCATCCTTTTTTCACTATTTTGAACCTCTCTATCATGTCATTCATGATATGCCCAGACCTCCAGAGGCACTTTTATCTCTCAGATCAGATGTAAATGCCGGAGAACCAACTGACAGTTGGGCTGATCATGAAATGGAGAGGGCAACTCAAGAACCAGCTCTTCAACTGGAGGACAGAGGGATGATCCCTGAAAGTGAACTTCAAGCTGATAGCACAGAGGCACCTGTGTCAGAGGTTCAGGGGCCAACTAGTGACTCAGAAAGTGAAATATTCTGTGACTCATTGGATCAGCTGGACACTGTTAAGGTGACTCAGATCGGTGCCGGACATGGTGGTGAGGGGGCAGAAGATCGGCATGGTCCTCCCAAGAGAAGGAGAACCACAGGGAGAGAGGGGATGCAGCAGGGCTGGAGGGACCCCTCCGGTTATATGGTTCCCCGCAATGCTAGGAGGGTGGAGCAGCTTGCCTCAGGGGCTGGTTCAGGGCAAGGGGGCAGAGATGATTCTAAGGGTGGGCCTGACAGGTTACAGAACAGCCAGGTGCAGCAGCAGATTATTCTAGCCTTGCAACAACTCAGAGAGGACATGCAGAGCATCATGCGACGACTAGAGTTGGTTGAAGACCTTGCAACTGCAAATgctcAAAGTTCACAGCGGAGATCCCATTTACATTTGACAGCTGCAGAAACTGAGGAGAAATGGTGGCCATTTGACATCTCTGGACGTACATTACTGCTGTTGTTAATGTGGCCTTTTGTGACTCAGGCACTGATGTTTCTACTGAGATGGAGGAAGAGAAAGATTAATGTGTGCTTATGAGTTTACTGAGTTCAAAATGAAAGTAGAAGTCACAATGATAACTAATTAATTGTGACCTAGCGTTCAGTGCTTTAAATGTAGCACTTTGTTAGCATGAGGTGAAGAGAGGAAGATCTCATATCTCTGAAATCTGATGATTTAATCTTGTATGAACAAGATAACTGCAGTGCTTAGAGATACCCTGgagttaattattttattttatggccATGATGTGTTCCATTGTAATTCTGTAGCCATATGTAGAAACTTTgtcaataatgtattaatatacataatattgtaCTTTGAAAATAACTCATGTTTATTAGTTTCTTTGTGCTGATGGTTGAATTTGATATTGTAAATGCCATCTGCACCACAACACAGTATTACGGTTCTACTGATTTGGTTTGTAGGATGTTGCACTTTGTAGAACTGactgaaaaatgtatgcaatcaAAAAAGCCTTAAATAAATACAGGGGCCTTCATGCTGGGAATGTGTAGAAGCTATAGCTCGGATATGAGAAAAAAGAACCAGCATATTCTGACCATGTTCTATAATGAAggaatacacataaataaactaaaacaaatggATTTTATATAATGGTCACCCATTTGttactgtattattaaacaTACAAAGCAGTTGTTCACAGACATAACTTATGTTTGCCGGGTTGTTTACTTTGCAACAACTGAGTTGAAATGAGTACTAGATTAGTAACACCTAGGGGAGTAAATTAAACTAAATCCATCTCTTCAGGAACTActatattagatttatttatctaGGTAAATCTCAGGTACTGCCCTATCGACACAGTGGAATTAAACCAAGTTATCGAGACTCTTCGGTTCTTCATGTGATTGTTGCCATCCACAAAAACACCAACACCAGTTCTCTCCAAAGTCTGTgttttgcaaatgcatttatatgaacCTTTTCAACACTACTGAATAAAGATGGCAAGAGTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127428 lncRNA downstream 163188 7011203 ~ 7011430 (-) True G86098
TU127426 lncRNA downstream 165505 7007826 ~ 7009113 (-) True G86096
TU127422 lncRNA downstream 171687 7002260 ~ 7002931 (-) True G86094
XR_006252235.1 lncRNA downstream 172469 7001006 ~ 7002149 (-) False LOC122355669
TU127548 lncRNA upstream 101052 7283886 ~ 7285998 (-) True G86184
TU127551 lncRNA upstream 103576 7286410 ~ 7287752 (-) True G86185
TU127556 lncRNA upstream 106336 7289170 ~ 7290516 (-) True G86187
TU127554 lncRNA upstream 107894 7290728 ~ 7292120 (-) True G86186
TU127557 lncRNA upstream 114966 7297800 ~ 7298146 (-) True G86188
XM_043253937.1 mRNA downstream 1250 7171396 ~ 7173368 (-) True hexim1
XM_043253675.1 mRNA downstream 894270 6197482 ~ 6280348 (-) False LOC122355417
XM_043254022.1 mRNA upstream 176549 7359383 ~ 7365015 (-) True kcnj19b
XM_043254313.1 mRNA upstream 321882 7504716 ~ 7521406 (-) True hectd2
XM_043254236.1 mRNA upstream 344242 7527076 ~ 7538565 (-) False pcgf5b
XM_043254234.1 mRNA upstream 344242 7527076 ~ 7538563 (-) True pcgf5b
XM_043253178.1 mRNA upstream 369298 7552132 ~ 7554852 (-) True rpp30
TU127438 other downstream 70400 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 503371 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1101186 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1120265 6051723 ~ 6054353 (-) False LOC122355418
TU127212 other downstream 1167511 5990913 ~ 6007107 (-) True G85930
TU127575 other upstream 205402 7388236 ~ 7388910 (-) True G86203
TU128131 other upstream 1165328 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 1335401 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 1336146 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 1427718 8610552 ~ 8612445 (-) True G86783

Expression Profile