RNA id: XM_043253979.1


Basic Information

Item Value
RNA id XM_043253979.1
length 1996
RNA type mRNA
GC content 0.39
exon number 2
gene id ifit10
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7609394 ~ 7611992 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctttccctctctcttcatccaaagtttcagttttcattttgagttTACCACTCCCATCTCTAGGAGAGGTCAATAAAATCTGCACAAGCTTCCGCATTAAATAGATTCTGAAACATTCATCATACAGGCGTCCTATAAGATATGGATCTGGACAGAACTCTGAGATCAAAACTTCACCAGCTGGAATGCCACTTCACCTGGGCTCTGATAAAAGATGATATAGATCTAAATGATATTCTCAATAGACTGGAAGAACAGATTAAGTTGGACTTCGCGAAGAAAGAAAGACTTGCCAGAACTTATAGTGCTCTGGCATATGTCCAATTCCTTTTGGGGTTACACGAGGAAGCCCATAACAGCCTCATGATATCTGTGAAGTTACACACGGAATGCCATGGGGATGAATTTCACAAGACGCTCATTGTCACTTATGGAAACCTTGCCTGGTTAAACTACCACATGAAGAACTACACAGAATGTGAAAATTATTTGAAGAGGCTTCAGGAGATAAACGAAACCTTGCAAACTGAGTTTTCATCTGTCCCAGAAGTGCTGGGTGAGAAAGGATGGACTTTTCTTAAATTCTCCCGGAAATATTACGATAGAGCCAAACAATGTTTTAGGAGGGCTTTAGATCTTGAACCCGAGGAAGGGGAATGGAATGCTGGCTATGCCATTTCCCTGTATCGCACTGATTACGAGAAATGCACTTTGGAGGATTCGCACACAATAAAGCAACTGAGACTGGCCATTGAAACGAATCCAGATGATGACGTTCTCAAAGTCCTCCTAAGCTTGCGACTGATGGTTTACAAGAAGTACAGAGAGGCTGAAAGCTTGGTAGAGAAGGCTTTAGAAAGCTCTCCAGATCACCCACATGTAATGAGATATGTTGCGAAATTCTTCAGGAACCAAGGAAGTGTGGACAGGTCAATTGCTCTTTTAAAGCGAGCCCTTGAACGCTCACCTAATTCAAGTTTCATTCATCATCAGTTAGCTCTTTGCTATAAGATGAAGAAAATCCAACTGCTGCAAGAGGGAAGTCACCACACCAAAGGGTCAAGAGTTCAACAGATTCGCAATCAATGTATCTATCATTTAGAAAAGGCCACCAGCTTGACGGCCTTCTTCATTTCTGCAATGAGCGATCTAGCGCTGATGTATGGAGAAAACCACGACATGTCACGGGCTGAGGAGCTGTTTCAGGTCACTTTCAAAGCAGCCGAAGAGAAGAATGACAATCTACACGTGGTCAATTTGTGCTATGCTGAGTTCCAGCTATACAGTCACAGATGTGAGCAGTTGGCTATTAAACACTACATGGAATGTCTAAAGATAAGCCCTGATTCGGTCGAAGGGAAAAGAAGTGCCTATGGTTTAAAGAAGATTGCTGACAAACGGATTAAGAGAAACTCACTGGAAGGGTAGGCTTATGGCATACTAGGGtttcttcataaaataaaaggaGAGAAACATCAGGCCATTGAGTGCTATGAGAAATCTCTGAGTTATGAAGACAATGATGAGTTCCTCAGCAACCTTAGCGCACTCAGGCTGTCCTTGCAGTGAAGTCATCACATATTTTGTGCTTACACTATCAGATGTACATACTGCTATACGCATCTGAGCGTGCTACATGTATCGACACTTTatggttatttattatataactgtataatggagattaagttaaattatataatatactttgTCTTTATTAATGGCTAAAATAGTTTACAGTATTTCTAAATGGTCTAATACAGTATTTACCCAAAAGTCACTTTACACTAAGAGCTTAAAAGTTGAAACAAAACTTATAATGTATATAGGTCTTgtttctttgtctgtttttctcaAGCAGTTGTTTGTACAGATCAAAAACTGTTACACGGGTACTGTggattgataaaaaaaatgtaattgtttcttGATGTGagaataatcaataataatatatcaagTACTggtgaaataaacatttacctTTAAACCTA

Function

GO: NA

KEGG:

id description
K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127746 lncRNA downstream 12396 7592801 ~ 7596998 (-) True G86325
TU127743 lncRNA downstream 18411 7588311 ~ 7590983 (-) True G86324
TU127609 lncRNA downstream 86393 7522664 ~ 7523001 (-) True G86232
TU127605 lncRNA downstream 104933 7502577 ~ 7504461 (-) True G86230
TU127584 lncRNA downstream 122319 7480055 ~ 7487075 (-) True G86210
TU127752 lncRNA upstream 3876 7615868 ~ 7617213 (-) True G86330
TU127757 lncRNA upstream 19404 7631396 ~ 7634556 (-) True G86334
TU127756 lncRNA upstream 22646 7634638 ~ 7636144 (-) True G86333
TU127781 lncRNA upstream 86673 7698665 ~ 7699014 (-) True G86354
TU127783 lncRNA upstream 93229 7705221 ~ 7705483 (-) True G86356
XM_043254351.1 mRNA downstream 678 7604853 ~ 7608716 (-) True LOC122355798
XM_043253276.1 mRNA downstream 31193 7573171 ~ 7578201 (-) True LOC122355224
XM_043253178.1 mRNA downstream 54542 7552132 ~ 7554852 (-) True rpp30
XM_043254236.1 mRNA downstream 70829 7527076 ~ 7538565 (-) False pcgf5b
XM_043254234.1 mRNA downstream 70831 7527076 ~ 7538563 (-) True pcgf5b
XM_043253976.1 mRNA upstream 143 7612135 ~ 7614367 (-) True ifit9
XM_043253706.1 mRNA upstream 24851 7636843 ~ 7646791 (-) True stambpl1
XM_043253707.1 mRNA upstream 24851 7636843 ~ 7646777 (-) False stambpl1
XM_043253709.1 mRNA upstream 39756 7651748 ~ 7662731 (-) True lipf
XM_043253708.1 mRNA upstream 39756 7651748 ~ 7662378 (-) False lipf
TU127575 other downstream 220484 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 505176 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 938147 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1535962 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1555041 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 736170 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 906243 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 906988 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 998560 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 1071060 8683052 ~ 8687548 (-) False plbd1b

Expression Profile