RNA id: XM_043253994.1


Basic Information

Item Value
RNA id XM_043253994.1
length 3763
RNA type mRNA
GC content 0.47
exon number 19
gene id snx29
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8417232 ~ 8511214 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACTGAGACGAGCGCCGTGCAGTGGCGTTAGCTCCAGTTAGCACGATGATACAGTGTAACTCGGTAGAAACAGTCATCTCGTGATAAACAGTAAACCCTTACGATACTTTAGAAAACAGAGGATCCATAGTTGTGATGCATTAAACGGCTTTAAAAAGTGATAGTGTTGTCTAAGCTAGGCCTCGGCTGTACTGTAACGTTTAACTGCTCTGCAAATGAAACCATGGAGAACAACCCAGAATGTAAACAGTGTTGTTAAACATATTTTGGCCTTAATCTGATACTTTTGGGGACCTACACAACCGGGATTCATGTCGCTTGCTAAACAGTTTGATCTGGAATTTCAGAATGAACGGCGCACAGCAGAATGACCTGAAAAGACAAAACTTGTTAGAGAGACTTCTTGATGCAGTTAAACAGAGCTGACGTTCTGGTTTTTTGTGAAGGAGCACCTCAACCGGCATGAGTTGCAGCGTTTCTACTCTCTGCGGAATATCACGTCTGAGCAGGGCCGGGGCCGGGCATGGCTTCGTTGTGCCCTGAACGAACACTCGCTGGAGCGCTACCTTCACATGCTTCTGGCAGACCATGCCCGCCTTAGTGCCTTCTATGAAGACTGGGCTTTTGTCCTAGATGAGGAGAGAGCCAGTATGCTGCCCACCATGGCTGCCgGGCTCAATTCCATACTGTTTGCCATCAACATCGACAACACGGACCTAAATGGCCAGGTCCGTGGAGGGCCATCTGTCTCCCACCTGCTGAAGGAGTCCACACAGGGCATGAGCAGTTTGTGGAAAGAGTCTACTCAAGGTGTCAGCACTCTTTTGCGTGAAATCGGTACCGCCACTGCAGTGGTTCCTGGTTTCATCCCTCGCTCAGATGCTCCATCAGACCCTCTGCCTGTCCTGCCCCGCAGCACTTCTGCAGATTCTGGATTAAGAAAAGAGCGAAGACGTAAAAAGAAGATCACAAACATCATCTCCTTTGATGATGACTTGGACGCGGGTGCAGAAGATGAGGACGAGGCTGGTGAGGACGTTGTGAGGAGTCTCAGGAAGAGTACGGTGGGTCATATGAGTTCTGAGGAGGCTCTGGACCCTCTGGACTCCACCTCTCCTGTTCATAACGGCCTGATTGAGTCTGGGATCGTGAGCTGGGCTGAAACACCCCCGCAGAACGGAGTACTGCCTGATACCAAGAGCATTGAcaatgaggaggaggaagaggacgatATTTATGGAAAGAGCAGGCCGAAACTGCCAGAAGAGGATCATGGGAATGGGGAGCAGATGGTTGTTGGGAGTTTATCCAGTGTTTCCACATGGAGTCCAAGGCAAATCATCACCGACAATGACAACGACAACTCCCACATTCTCATACCTCTGGCCCCCAGCGAGCCCTACACACAACAAGCTGGCAGTTCAGTTGAGAATGTTGAATTTCATGGACAGAAGGAGAGCTCAAGTCCACCAGCTGACGGCGAAAAACAAAGCCAGCTCCAGTTTAGCATGGAGCCAGACTTGCCAGCACAAACTGTGACCAGTGTTTTGCCGACCCCTGGCCTTCCCGAATCCATGACCGTCGCTGAACTGCGGCAAGCCATTGTGGCCATGATGAACAGGAAAGATGAACTCAATGAACAGAACATGTCTCTGCGCAGTCTCCTGGATGGAGAGATGGAGCACTCTGCTGGGCTCAGGCAGGAGGTGGACAGCTTGAAGAAGAGACTGGCTGAGCTAGAGGAGAGACATGCAGCCAAAGTCCAAGCTCTCATGAGAGAAAATGAGGTTCTGAAGGTCCAGCTGAAGAAGTATGTTGGAGCTGTCCAAATGCTGAAAAGGGAAGGCAGCCAAGGCAGTGAAGCATTAACCATTCAAAGGAATTGTGACAGTCCCCTTCCAGCCCCACAAAATCGGTCTGTAGCTGATATAGAGGAACTGGCTGCCAACTATGAGCGTAAACTCATTGAGgtgGCTGAGATGCACGGAGAGCTGATAGAGTTTAACGAGAGGCTGTACCGCTCCCTCATGGCCAAAGACAACCTGATCGGACAGATGAGACAGGAACTCATCGACCTGCGCGGGCCGGTGCCAGGGGACCTGAGCCAGACCTCTGACGATCCCAGCCTATCTGACTTCGAGACAACACAACGTGCCCTTGTCAACGTGTGGATCCCTTCAGTGTTCCTTCAAGGTCGGGCTGCCAACACCTATCATGTATATCAGgtcTACATTAGAATCCTGGACAATGAGTGGAATGTGTACCGGCGCTACGCTGAGTTCAGGGCACTGCACAATTATCTGCGCCCGCAATTCCCACAAGTCGACACGTTCAATTTCCCACCTAAAAAAGCCATCGGCAACAAGGATGCCAAGTTTGTCGAGGAGAGAAGGAAACATCTGCAGTCATACCTGCGCATGGTGATGAATAAACTGATCCAGACACTGCCTGAATTCACTGCCCAGCCAACAAAGGAGACTTTACTGCATTTACTGCCTTTCTGCCAGGACAGCCCGACGGCTAATGAGAGTGGAGCCAAAACTGCCCGATCCAAAGCCTCCAGCCGCTTCCCAAGACTAGGCCGTAACTCTGGCCGAGAAGCCCGGAACCCCGAACCCCAGAGCGGTGACCTTTAACCTTTGAGCGCAATCCTCAGAGCTCATCAGTATGGATGTACCGAACCATGGACCTTCTCTTCTATTATGGATGTACACACCGACACCGTTGGGGACTAGCTGGGTCTATAAGCGCCGAACAAAATCTGCAAGAAACTGCAGCGTTTATCGGTTCAGAGGAAGAACTTTTTCAGTTACTATCGTGCCTAGTGATTTATTACACATGTTGTTTTTGGGAAAAGCCAGGATGTCATTTTGACTAACAGCAGCGACATGAAACTTTTATGAGACTGCGATGAGAATTATGCGATTGTCTGGAAATAATTTGCACATCATCATATTATTTGACTGCCACACATGGGactcaattttatttttctgtttgtgtacattttgtTCCCATGCTCTGCTATGTATGAGGCTCAAAGTTAGATGTAATTGTGTTACGACTGCacttataatacatataaaaaacaatCGCTCTCCACCTTCCTGTTCATAGTAGATTCAAAAAACGATTTTACGTCGATGAATGTCTGGTAAGGATGAAAGCGCTAATCGGATCTGGGTTCTCTTGCTTCAGAGACCTTGTCTTCTGTCCCTGAAAACCTTTCATCGGAGGTTTCCAGGGCTGCCATTATCCTTTATGACCTCAAGAGTACTGTTACACACAAAGATGTGGCGTATCGTATTATCTGGACTGAACAGAAGAGAATTTCGTAGCAGGGGAACCTCCACCGAACGCGTGAGAGATAATTTTTGCCCTATTTTAACTACAAGCACAATGATGATTGGaatttattactaataaatagtatttatgGTTTTAACATGTTATATTGTATATGAAGATCGTAGAGAGGAACCATGATGTgtttaagtaaattaatattcCGCTATCAAATTGATTGTGATGTAGAATTGCCATCAGATTCTGTTCGGCTGTAATGCATACAGTAGCAGATCTTTTGTGTGCTTTGCATATGTGTCTGTTTGCAAACTTTTGTACTAGTAAGCAACTGTATATGATGGTTTTTTCTTAAACAAAGTATCTTTCTGTCCCAAATGTGACAGGAAGTTGCTGTTTTGCAGCCTTAAGAGTACACGAGCTTAAtgaatacacaaataaacacaagtaCCACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128139 lncRNA downstream 72623 8344336 ~ 8344609 (-) True G86608
TU128137 lncRNA downstream 77417 8339456 ~ 8339815 (-) True G86606
TU128132 lncRNA downstream 78532 8334407 ~ 8338700 (-) False cpped1
TU128087 lncRNA downstream 126822 8290080 ~ 8290410 (-) True G86576
TU128056 lncRNA downstream 218108 8198918 ~ 8199124 (-) True G86553
TU128374 lncRNA upstream 423 8511635 ~ 8513245 (-) True LOC122355061
TU128385 lncRNA upstream 24761 8535973 ~ 8538206 (-) True G86775
TU128416 lncRNA upstream 86182 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA upstream 112085 8623297 ~ 8626329 (-) True G86807
TU128431 lncRNA upstream 115882 8627094 ~ 8630207 (-) True G86809
XM_043253551.1 mRNA downstream 57240 8334404 ~ 8359992 (-) False cpped1
XM_043253550.1 mRNA downstream 57240 8334404 ~ 8359992 (-) True cpped1
XM_043253547.1 mRNA downstream 85693 8325243 ~ 8331539 (-) True ercc4
XM_043253545.1 mRNA downstream 92191 8303767 ~ 8325041 (-) True mrtfba
XM_043253017.1 mRNA upstream 191 8511403 ~ 8513265 (-) False LOC122355061
XM_043253016.1 mRNA upstream 191 8511403 ~ 8513264 (-) False LOC122355061
XM_043254353.1 mRNA upstream 3501 8514713 ~ 8515183 (-) True LOC122355801
XM_043253924.1 mRNA upstream 5966 8517178 ~ 8520053 (-) True rsl1d1
XM_043253923.1 mRNA upstream 9288 8520500 ~ 8528474 (-) True gspt1
TU128131 other downstream 57252 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1028322 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1313014 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1745985 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2343800 6064298 ~ 6073432 (-) False LOC122355418
XR_006252260.1 other upstream 7023 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 7768 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 99340 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 171840 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 176286 8687498 ~ 8687570 (-) True trnar-ccu_66

Expression Profile