RNA id: XM_043254000.1


Basic Information

Item Value
RNA id XM_043254000.1
length 2572
RNA type mRNA
GC content 0.45
exon number 6
gene id ipmkb
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 1628163 ~ 1641997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCGGGGCGGAAACAAACAGCGAAGCGTTCGCAGAACTGCGAGTTCCCGTGCGACATGACTTACTCCGCCAGGATATCGTGTCGATCTTCGCGCTCCGCTCGTTCCGCATCTACCATCTCGGACCAATTACCGCGGGAGGAGCGTAAACATCTCTGAAGCCAGGAAGTGGGATGTGGCCCAGGTGAAAAGCTCGTTATATGGTCGCGAGCGTGGGCGCCGTGACTGATGGCACGCGATCGGTCGCACACATCAGGATGACGCGACGAGGGGTTTCGATCAGTACGTGAATTCGTTGTGTGGAGGACAGTAGTTTAGAGAAATAGCGAGTCATTGCAGCGAAGTCTTCGGTGCGAGGGTCGGCTCGGCATCATAATGGACTCGTCTGTGGCGCTGGGGAGGCTGGAGCTCGCGCGTCCGTTAATGACCCGCGGTTCGTGTTTACCGGAGGGCGCGCAGAGCGCTCACCTGAACGGCTGCGTGCCGCTCTCCCATCAGGTGGCCGGACACAAGTATGGCGTTGATAAAGTGGGTATCTTGCAACATCCCGATGGTACAGTTCTGAAACAGCTGCAGCCTCCTCCAAGAGGACCCAGAGAGATGCAGTTCTACAGTATGGTGTATGCTGAAGACCACTGCGACCCCTGTCTTGTAGACCTCCAAGCGCACCTCCCCAAGTACTATGGCACGTGGTCCTCACCAGACGCACCCACAGACCTGTACCTTAAGCTGGAGGACGTGACACGCAGGTTTCAGAAGCCATGCATCATGGACGTGAAGATCGGCCAGAAGAGTTATGACCcctttgcttcacaggagaaACGGGAACAACAGATCAGGAAATACCCGCTGATGGAGGAGATTGGATTCTTGGTTCTGGGGATGAGGGTGTATAAAGTTGGCTCAGACAGCTTCGACACCTATGACCAGCATTATGGAAGAGGTCTTGTGAAGGACACGATCAAGGAAGGTTTATCCAAGTTCTTCTACAACGGCGACGTCCTCCGCAAAGACGCCGTCACTGCCAGCATCCTCAAAGTCCAGAAGATCCTTCAGTGGTTTGAAGGCCAGAGTCGGTTAAACTTTTATGCAAGCTCTCTGCTCTTCGTCTACGAGGGCGTCTGCGCGCCTAGTCTCGTCTCTCAGACCGTACGGGAGGGCCAGATCGCACCCGAGGCCTGTGAGCAGAACAACAACATCGATCAGAGCCTCTCCACCATTTACTCCCTGCACAAGAAAGGCTGCGGCCGGAGCCACTACCGAGCCAAACAGGACAACGGCGTTTGGAGCTCCTCGCAGCAGCCCAACGGCAACCGTGGCTTGGCAAGACTGGAAGAGGACGGGAAGGAAAGCGAGAGCGAAGCGGGACAGGAAGCGGTCAGTGACGTGGAGGTAAAGATGATTGACTTTGCACATGTCTTCAATAGCGAAGATCCCGACCAGGGTTACGTCTACGGCCTGAAGAACCTGCTGAAGGTCCTTCATCAGATTCTGGAGGAGTGATGGAACGCTTCTTGTCGTTGAAGGTATGAATTGTGTAGCCACTTTCATGTCTGTCCACCCGCCTTTCTCTAATCTGCACTACCTACACCATCAGTGGAGTAACATGTTTGTAATCCTTCGTCTGATGTATGTGCTTTAGTCTTTTAAAAGCTTTGTACAGTTTATGAGATCTTACTCAGGTAAATGAATCTATATTGCTTGTATATTTATCCAGACAAAAGAAGAAACACTCATCATATTATGCCTCAGATATTGCGTATTAGTTCCTGTTTCCAGAGCCattgcaggattttttttttttttttttttttttttttttttatccttttaattttttttaaatcaacgtAATTGAAAATAGGAATTTGATGAGTCAGGATTTAGGAAAATATATTTGACGTTTCTTTCGCATATGCTGCCAATATGACCCTGCCTGTTTCAGACCTGTTGAATTGTGAATTTTatctcaagtttttttttttttgtgatttgaaaaCCTATGTGTGTTCATGTTATGTGATTACTGATGCAATATGACTGAAATAACAGTGGAAGTAATGAAGtagagatcttttttttttcatcatacaGCCCTTGCGGTTTGTATACATCAGATGCCAAAGTTTCCATTAATAACGTTATTATAATATCTtgaattgtgattttaataatacagtcTTTCTTCGGGACACAAACCAACTTACTTGGGTGTCTAGgtatttcataaaatgtttgtacACATTTATTTGCTGACTCCACCAAAATAGGAACTAAAACTTCAGCGTTACTCAATATAAGAGGGGGGAAAAGAATaccctttaaaacataaatgttttaatttcagaaatggattttcctttttaattttttgttggtctctttctttttactttatcATGTTTTGTCttgcatataaaaacatatgaTTTGTCAGTAACCATTTAACTAGAttttgcatttgtggtttacatgtttattagcattttttttttaccaaggaATATTGAGGGTTCCCacaatgtataaaaaatgtaagaataaaattgatattaaaaaaaaatatatataaa

Function

GO:

id name namespace
GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity molecular_function

KEGG:

id description
K00915 IPMK, IPK2; inositol-polyphosphate multikinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125816 lncRNA downstream 127 1626295 ~ 1628036 (-) True G84884
TU125817 lncRNA downstream 23364 1599857 ~ 1604799 (-) True G84885
TU125814 lncRNA downstream 42213 1585749 ~ 1585950 (-) True G84882
XR_006252202.1 lncRNA downstream 81669 1545553 ~ 1546494 (-) True LOC122355293
TU125699 lncRNA downstream 446031 1161098 ~ 1182132 (-) True G84795
TU125824 lncRNA upstream 7464 1649461 ~ 1650134 (-) True G84892
XR_006252228.1 lncRNA upstream 68501 1710498 ~ 1737269 (-) True LOC122355537
TU125844 lncRNA upstream 85109 1727106 ~ 1729422 (-) True G84909
TU125854 lncRNA upstream 109405 1751402 ~ 1754571 (-) True G84919
TU125866 lncRNA upstream 322989 1964986 ~ 1969050 (-) True G84928
XM_043254465.1 mRNA downstream 254079 1217427 ~ 1374084 (-) False pcdh15b
XM_043254464.1 mRNA downstream 254080 1217428 ~ 1374083 (-) False pcdh15b
XM_043254466.1 mRNA downstream 254080 1217428 ~ 1374083 (-) False pcdh15b
XM_043254467.1 mRNA downstream 254080 1217428 ~ 1374083 (-) False pcdh15b
XM_043254463.1 mRNA downstream 254080 1217429 ~ 1374083 (-) False pcdh15b
XM_043253887.1 mRNA upstream 837 1642834 ~ 1648762 (-) True ube2d1b
XM_043253884.1 mRNA upstream 10452 1652449 ~ 1658747 (-) False zgc:171971
XM_043253882.1 mRNA upstream 10452 1652449 ~ 1658621 (-) True zgc:171971
XM_043253885.1 mRNA upstream 10452 1652449 ~ 1658283 (-) False zgc:171971
XM_043253927.1 mRNA upstream 119801 1761798 ~ 1774365 (-) True fam13c
TU125629 other downstream 731133 891132 ~ 897030 (-) False dlx4b
XR_006252248.1 other downstream 1267851 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 1267851 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 1267851 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 1306903 319330 ~ 321260 (-) True G84521
TU125823 other upstream 228776 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 851713 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 1125911 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 1448788 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 1616534 3258531 ~ 3299688 (-) False G85366

Expression Profile