RNA id: XM_043254025.1


Basic Information

Item Value
RNA id XM_043254025.1
length 6646
RNA type mRNA
GC content 0.42
exon number 3
gene id jcada
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10507843 ~ 10516992 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTTTCTTTCACAGCGATGGCCTCTCCTGTGCAGCTGTTCATGAGCTTGCCTCATCTGGACTAGGAGCGGAATTCATCTGACACTCACacaggcacgcacacacacacacacacacacacacacacacacacaccactaaaagcaaaaacacaccGCTTAGCCATGTACAGCGTGGAAGACCTTCTCATCTCTCATGGATACAAAGTCCCTCAAAGGAACAGCAACAATGTCCCTGTCTCACATTCGTCTTCCCCCCACCCCGCAACCTATGAGAAATGTCTGCCGACACGAAGCGACAGCCGGTGTGAAATTGCTGAGAAGCGTAAAGGACACAGCGGCGTGAATGGCTACGAGGGGGACCATGTTTACAGCGGCGGAGGCATCAGACAAGCTCCTGCCAGGGGATTCCCCGGTGACGCCGAGAACAGGGTCAGGAAGCAGAGGACACAAGACGTGGACAACGGTAACCTAGGAGATGGACGTTTGCCTGAAGATAGCCTGACCACGGACAGTGGGTTTTTTGAGACCCACAGAGGAATACATTCACAACCTAGATCTGAGCAGGATGTGTCCTACTGGCGAAGAAGAGGTCAGGACTTTAGTGTGCTTTTGGATTATGCAGACTTCAGGGACCCACGTGGAAGTGGAGGAGGGGTTCCCAACAAACCAGAAGGCATGCAACGGAGACCAGAATCTGCCTTAAGCACAGAGGAACATAACCGTGAAAGACAACGACGGGCAGAGAGTGCACGTgccagggagagagagatggctCTGCACCAGTGGAGAATTGCAGCTGAAAGGAAGTACCAAAGTTTGGGAACAGAGGAGTGGCGCCCAATGACCAGCATGAGCCGCCAGCCATCCGAAAATGAGGTGGCACAGGAGCAACGCAGGCCACGAACTGCAGAAGGAGCTGTTCCACCTAGAACCAAAAACAAGTCCCAGTCACTACCCAGAATGGCTCTTCAATCTGAAAGCCTCCAGTACTTTAGCATACCAACTGCTGGGCAAGACTCATATGGAGGCTATAAGTTAAATGGCCATCATACACGAGACCCTCATGGACGGCATCTTAATGATGGGGAGAACAGGCAGCGGTGGACTGACCGATCAGGAGCGCAGTCCGCACCACTATCAAAACCCAGATTTAGCCGACCGCTCAGACCTCCATCTTATGAAGTGCACCAGCAGATGCGTGGGAGCGCAGAGATGCTCACGGGGGAGCCTGCTCCTCGTGCAAGAGACAGAACTCCACTGCCCTTCTCAAGGCAGGAGTACTTTGTACAAGAACTGGCTGGATCTGGTGTGGAGCCCCCCGGTTATATCCCTCCTCCATCCTACAGGAGGCAGCCTGTAGTTAATAGAGGTCACAGAACTTATCCTATCTCTATGGGTAACCACCAATATAGAGGTGACCCATATATGCAGGGTTCTGCGATGACAGAAGTGCAGGAATGGTTTATAAGGCAAACTGGGATGGCTTGGCCAGATCATTACAGGGATGGAAGGAGAAGTATGCCCTGCAGGAGACAGGCGTATCCAGGCTACAGTGAAGAACGAATGGGTAATGTTCAGTACATTCCCTTTGACGACCCTCGTGTCAGACACATTTCAGGAGCAGGGATAGATGGAAACTCGTTGACGGATGCAGACAAAATCAGAAACATCAGGAATGAGATTCCGGTCAACCTCTTATCTGAGAAATCTAACGACAGTGCCTTTACTCTCACAGAGAAATCCTTTGACCGCACTGAACCATGTAAAAGCAATATAAGTGACTCTGTTAATGAGGACAGTATACACAAGGAAGTGCTGAAGGAGACAGAAAGTTCAAACACAATACCTGACCAAAACTGCAACAGGCATCCAGCTACCCATGGAAATATAGTTGCTCTTCAAATGACAATGCAACAGAACTCAAACCAGGGTTTGATTGAGACAGTGACACAAGTAAAGAAATTTGAGGCAAAAACTGTGTCTGAGAACAAGAAAAACTCCAAGAAGAAGCTCAAAGAAACAATGTTTTGCCTTGTATCTGTCCCTATTAGTATGCAAGCTAACAAAAGTGTGTCTGACccaaataacaatgaaaaattgACAAATTCAATAGAAAACACAGTGGGGCAGCATGACAaccaaaaccttttaaaaacatcaagcaAAGAGAAACGAATACAGTCCAGCAGCTCCCCCTCTATTAAAAGTTCCCCTCTGAGGAAAGAGACTGTAGATACAAGGTCCCTTAATCCAAGCCAAGACAATGAATTGTTCTGTCCAGGATCCTGGCCTGGAGATCAGTACAGAAACCAGGAAACTCAGACGGGTTCTCCAGAAGTATCCAGAAATACCCATCCTCCGACAAATGAACATTCCTCCCCTTACACGATCACTGATAATGAAGGTGAAACCAACTGTAGTGCCAACTACGGATATCCTATGATAGGTCAAAAGGATCTCAACCCTTCCAGCAACAGTGCATTCTCCCGAACTAGAACTGGAAGTAGTTCAAGTATAAGGAGCCCAACTCTACCCCAATCATCATCAGTTCCGCCATCTCCAGACCGTCAGCCTTTGCTGAGAAAGACAAACCAAACAGCAGATGGTCAAGAAGTTTTTGGACAGTTCTTGCTAAAGCCAGTGAACAGACGAAAATGGGATGCTATCGGGGAGCTTGAGTCTTTTAATAAGGAGATACAGGATCATACTGGGAAGTATCCAAATGTTGACCAGAATATAGAAGAGCTGGATGAGGCATTGAATAGTATTCTAGAGCTGAGTGACTCAAGCAGAGACATCAATAATACAAGACAGGAAACCACCACCCTCCACACGAAGAAGGAAACTGACCAGCAGTCACATATAGTGCAGGTCACAGAGACGCAAATGAAAAGCAATAACTTAAATGTAATGTCAGATTCTGGGAACAGAGGCCATCCAGAatacaaaagtataaaaagttCCAAGGCAAGGGTGAACTTGGACAGCCAGAGACAAAAAATACCCATCACTAAATCTGATAATTATGTCAGCTTTGAGATTCTGCAGAGGGGAGACACTGATCCAGCAGTACATCGGCAGGATATCCCAGTGCCAAAAGAGTGCTTGCTTAAGGATGTTGGTTTAACGGTATACACTGCCATTCCAGACACTGTGACCTCTGGATCCCCTACCTGCTTGAGTCCTGAGTCACCTATGTTAACTAGCCCCTCTGACAACTCAGAGATGTGTGAGACTTTGCAGATTACGTCATCAGACAGTAGCGGAGATTTAAGCAGGCACAGTCCTGAGTATGCTGAAGGTACTCAAAGCTTGAACAATAATAATGCCTTCAACTCCAAAGCCCCCAACAAGAAGGAAGCTGGGGAAAACCCAGATGTTACAAGGTCCTCACGTATACATGTGATCAAGAGTCTTCATTGTAGGTTTAAGGCTAAttatgaagatgatgatgatgatgacaattGTTATTCAGATTATTTAAGTTGGAGTAATGAAAAGACCTTGGCAGATGAACACCTTGAGACTCTTCTGAGTCAAGAGAAGGCCAATAGTATGCAGAATGAAGACCTTAGTAACCTGTACCAAGTCCAGTGTGCCAAAGGTATTCCTGAAAATGAATCCATTGAACAACGGGCTGCCAGAATACTTGGCATTGAAGTGCCAGTTGAAGCTTTGGTTGTTGATCAGGATGATGACAAACTGGTAGAAAGAAATTTGAAAACCACAGATGTTCCAGAATTGGCAACACAAACCAAAGAGTTGAGCTTAAATGAGGACAAACAGAATGTCAGTAGAGAGTATGAGGAAGTGCCAGACAGGTCTATGGAAAGTCATGAAGATATGTCAGAGGTAGGATTTGGAGGAGATCCAGAGTCTGGAGAAGATTTACTTAGCGCTGAAAAGCATAGCCAGAGAGTCTCCTCTGTGTTGGAGCTGCCAGAGTTTCCTCCAAGTAACTTATGTTTGTCGCTTCCACTGACCGAGGATGAGGAATTGACTCTTAGTGTAGGTGGGGGAGAATGGAAGGAGACAGTTAATTCTGAGATAACAGAAGTACCACATGACATGCAGGCATATTGCCCACCTCCTCTGTCCCCCTCATCCACAAATGATCAGGCATCCCTGGAGTACACCGTCTATGCAAAGGAGGAAAGCTGTCAGTCATTAGTGAGAACTATTACCAGGATCACCTTGGCCAAAGAGACAGGCTTAGAAGAAAAGGGAGGAGAACTAAAAGAGTCAGTTAAAGGGGATGAAACATTAGTGGAAAAGAACCAATACAGTGAGAATGCAGtcagagaaaacaaagacacgTCCAGTTATATGCAAGAAGAGGATGAACAAGCTCAGGAGGAAGTTTCAGCTGAAGAGGTGATACTAGCAAGATCAAGGCAGTCACCAAAGTCATTGGCACGTCCAGTCCCACAACCCCGCAGTGGCATGGTAGCAAAGAGAGAGATCACTCTGCCACAAGGATTCAGCATGGATAATACAATGTCTGCAATTGAGGATGATGACAAGCTGTTTATTTCAGATGCATATGACCCCAGTCGTGTGGAGAGAGTCTGATCTTGGACACCATCCAAGCAAACTCTTTGACCTTACAGGAATACACgatgtaaacaaacactaatCTGAAACTGGACATGATGCAGGCATGGACTcaatttattaatgcataatcACAGAAGTTCATAAGCAGGCAGATGGACTTCATGCCACATATTAAGACTAATTTTCAGACCTTCTATGGCCTGTTGATGGATGAAGTAGCAAAGTTGTTTATCAAAGAGATATGAATGTATCAAGTAAAGCTCAGACATTACAAAAATAGCTACAAATCGGTCTGTATAGACTATAGTTTCTCTGCACCAGCAAATGCTGGAGTTCTGTCGGACTTTCACAGAACACAGTGTCATTGTGCCAACAGCGACAAGAAAGACACAAAAGCTTGCACTTCTCATTTTCTGCAGTATTACCAATGAGAGAAAGGAAAGATGCCTTGATGTATTAAAGCAATGAACTGGACTGGCGAGGTAGCAGCTGAATCGGTGACATTACACTGTGCTTTTAATCAcagagaaatatttttgtaagaaatgttAAAAGGAAAGTGTGATTATCTGTTTTACAGGTGGGAGAAACCATGCGTGTCACTGTGGTAAAACTgcaatataaaatcatattttttgcaaatgGAATAGGCTGCTTTTACCCAAATGAGGCAGCTAAGAAGAAAGCTGCACAGAGGCAAagatttaagaatattttgtgTGAAGTCTTGGTCTCTAGAAACTTTAATCTTAACTGCAGTGTCTTCAATAGTCAGTTCCCATagttattgctttaaaatgacttccTTCACTCAAGATTTTTATATATCTCATATGCAGTTTGAGCTTTTCAGTGTAGCAATCTGATAATGTATCATCTCATCACGAaatgcaatcaaaaaaaaaagaaaaatgtatttatttttatcaagcTATCAGTCTGTAcagatgaaaatatatattcaaaaaaagtgtttttattttaccttgtgggtttgtttgcttgcttaCAATCATTATGGATATATCATATCTGAATATGTCTATTAATCCTGTATTACTCGGACAATGAATGATTCTTTTATTGTGCCGTGTGGCGTGCTTTTTGTTGCACAAATGTCAGAAAGTGTTACATGTGTTTCTTTATGCACATACAAAGTATTCTGCGTTTTAAGTCCAATATCAATTCTGAAAGCTAACTCCTATTGTGAGTATATCTACGGGACGTAGTGCTTGTTAATCACTTTACCCTTGTAATTGTTCGGTTGCTTTCTGTTATGACTCAACTGGATACGCTTCCTCAATGTTATATCCATCACatagttttataaatgcaatcaaAAGTGCACTAAAATGAATTTAGTATTTAGCACATCCAAAAACTGGCGACAGCGGCCAAAAACTCCAAAATAAAGTCATTGCATCCATTTACTCTGAATATAGTTATTGTTATGGATAAAGAGTGCAATACCATAATGTTATTATTGTCAATATATCCCATAAGCGTAATAATAAACTATGAATTAAAGCAGATAAATGTTCTATAATCAGTGGATGGTTAGAAAAAATATAAGGCATAGCATTCATCACACTTACTTTTTGTAAGTTAGAATCAAGTAATTGTTGTAAGTAGTTCTTGATTGTTTCTACcattttgtacaattttgtttttcaaaacgGATGATTATATTGTTGCATATAACGTATATGGCATTTAAtatctttttctattttcatacaGAAACTGTACATGATTATTTTGTATTGGGTTGGAATTGATTTGCCTTCTCTGCATGATATAAGAGATGTAAACTGGGGTCaggaaaatgttttgcatacaaCTGCATTTGGTAccacattaaaattatattcattatattacatGGTGCACATTTTTATCCtgctaaaaaaatgatatttaaattcaaaacaagctattttttgaatattttacagaaaGGGAAGTATTTACTGTGCACCTCAGTACTTGTGTCTTTGAAGTATTGGGTGAATGTTGAATGAAATGTTTGAGAGGAAAATTCTTTGTATATTATAGCAGATTGCTCATTAATAAACTCCTTGCATGga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128885 lncRNA upstream 8145 10497463 ~ 10499698 (+) False LOC122355633
TU128887 lncRNA upstream 11566 10495475 ~ 10496277 (+) False LOC122355192
XR_006252232.1 lncRNA upstream 408902 10078658 ~ 10098941 (+) False LOC122355662
TU128850 lncRNA upstream 409863 10078468 ~ 10097980 (+) True LOC122355662
TU128849 lncRNA upstream 546885 9960647 ~ 9960958 (+) True G87095
TU129023 lncRNA downstream 372426 10889418 ~ 10889625 (+) True G87181
XR_006252208.1 lncRNA downstream 399194 10916186 ~ 10919109 (+) True LOC122355308
TU129005 lncRNA downstream 401787 10918779 ~ 10939829 (+) False LOC122355308
XR_006252189.1 lncRNA downstream 437666 10954658 ~ 10955795 (+) True LOC122355200
TU129060 lncRNA downstream 464286 10981278 ~ 10987710 (+) True G87207
XM_043254143.1 mRNA upstream 9203 10497425 ~ 10498640 (+) True LOC122355633
XM_043253243.1 mRNA upstream 11588 10481492 ~ 10496255 (+) True LOC122355192
XM_043253334.1 mRNA upstream 611310 9883033 ~ 9896533 (+) False LOC122355255
XM_043253442.1 mRNA downstream 6151 10523143 ~ 10582545 (+) False svila
XM_043253427.1 mRNA downstream 16729 10533721 ~ 10582545 (+) False svila
XM_043253443.1 mRNA downstream 19348 10536340 ~ 10582545 (+) False svila
XM_043253422.1 mRNA downstream 25236 10542228 ~ 10582545 (+) True svila
XM_043253424.1 mRNA downstream 25236 10542228 ~ 10582545 (+) False svila
TU128882 other upstream 16671 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 20502 10481615 ~ 10487341 (+) False LOC122355192
TU128819 other upstream 633948 9871664 ~ 9873895 (+) False LOC122355252
TU128728 other upstream 748382 9757273 ~ 9759461 (+) False LOC122355274
XR_006252198.1 other upstream 1655394 8836448 ~ 8852449 (+) False arsg
XR_006252209.1 other downstream 25237 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other downstream 25237 10542229 ~ 10579996 (+) False svila
unassigned_transcript_1922 other downstream 567285 11084277 ~ 11084370 (+) True trnai-uau_3
TU129235 other downstream 1177852 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 1419850 11936842 ~ 11944855 (+) False nbr1a

Expression Profile