RNA id: XM_043254031.1


Basic Information

Item Value
RNA id XM_043254031.1
length 4029
RNA type mRNA
GC content 0.46
exon number 28
gene id aclyb
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5628746 ~ 5658945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATGCACCAAAGCTGGTTTGCCAACCGCCAATAACgtcaaagaagaagaagaactcCGAGCATCAGCATCCAGTGAATGCGTATCACAGCAGCTGGGCTGTAAAGGCGTTTGACAGTCCTGAACTTCAAGACCGTCACATTGTGTAATTTGCCCGGCAGTGTTCTCGGTCGTGATGTCTGCTAAGGCCATTTCTGAGCAGACAGGAAAAGAATTcctgtataaatacatttgcaccACAGCAGCCGTGCAAAACCGTTTCTGCTGTGCCACCGTCACTGCAGAGACCGACTGGGAACGCCTTACACAGGACCATCCGTGGCTGCTTACAGAAAGGCTGGTTGTGAAGCCAGATCAGCTGATCAAACGCAGGGGGAAGCTGGGATTGGTGGCAGTTGACCTGAACCTTGAGGGTGTTCAGGAATGGCTGAAATTACATCTGATGACAGAAATCACAATTGGGAATGCGAAAGGGATATTAAAGAACTTCCTCATTGAGCCATTTGTACCTCACTCACAGGAAGAGgagttttatgtgtgtttgtacgcCAGCCGGGAAGGCAGTCATGTGCTGTTCCATCATGAAGGTGGGGTGGACGTTGGAGATGTGGACATCAAAGCTCAGAGACTTTTGGTGGGAATAGATGAGAAACTCACAGAGGACATGGTTACACAACAGTTACTTATACACGTTACAGATGAGAAGAAAGAAGTGCTGGCAAGCTTCATAGTGGGTCTCTTCAATTTGTATGAGGATCTCTATTTCACATATCTAGAGATCAATCCACTGGTGGTCACTAAGGAAGGAGTGTACATCTTGGATATGGCAGCCAAAATTGATGCTACTGCCGACTATATCTGCAAGCCCAAGTGGGGTGATATGGAGTTTCCTCCTCCATTTGGCAGAGAAGCTTATCCTGAGGAAGCATACATAGCAGATCTTGATGCTAAGAGTGGCGCCAGTCTGAAACTCACCCTACTGAATCCCAGAGGACGCATTTGGACCATGGTGGCCGGTGGTGGTGCATCAGTGGTTTACAGTGATACCATCTGTGATCTGGGTGGAGTAGATGAACTGGCCAACTACGGGGAATACTCTGGAGCACCCAGTGAGCAGCAGACATACGACTACGCCAAGACGATCCTCTCCCTAATGACCCGTGAGAAACATCTTGAAGGAAAGGTGTTGATCATTGGTGGTAGTATTGCTAACTTCACTAATGTAGCAGCTACTTTCAAGGGTATTGTGAGAGCTATCAAAGACTACCAGGGGCCCCTAAAAGAACATGAGGTTACTATCTTTGTTCGACGTGGAGGTCCTAACTACCAGGAAGGTCTGAGAGTGATGGGAGAAGTTGGAAAGACTACTGGTATTCCCATCCATGTCTTCGGCACAGAGACTCACATGACTGCTATTGTTGGCATGGCTCTGGGTCATCGGCCAATCCCCAATCAGCCTCCAGTGGCAGCACACACTGCTAATTTCCTGTTGAACACCAGTGCTAGTGCAGCTACGCCAGCAAGAACCAGAAATACTTCATTTTCTGAGCACAAACTGACCAATAGTGTCACAGAAGGCATGATGGCCACAGCAGGTGTTCCAAGAGCTAAGGCCACGACTCTGTTCAGCAAGCAGACAAAGGCAATCGTGTGGGGCATGCAGACACGTGCTGTTCAAGGGATGCTGGATTTTGATTACGTGTGTTCACGTGATGAACCCTCTGTTGTCGCAATGGTCTACCCCTTCACTGGTGACCACAAGCAGAAGTTTTACTGGGGTCATAAGGAGATTCTACTGCCTGTCTATAAGAACATGGCTGATGCTATGAAGAAACATCCAGACGTTGATGTGCTCATAAATTTCGCTTCACTTCGCTCGGCTTTTGACAGCACCATGGAAACAATGCAGTATCCTCAGATACACACTATAGCTATCATAGCTGAAGGCATTCCGGAAGCTCTGACCCGCAAACTCATCAAAACAGCCGATGAAAAGGGTGTCACTATCATTGGACCTGCAACTGTTGGTGGTATAAAGCCAGGCTGCTTCAAGATCGGGAACACAGGCGGAATGCTTGACAATATCTTGGCATCAAAGCTGTATAGACCAGGCAGTGTGGCATATGTGTCCCGCTCCGGAGGGATGTCCAATGAACTCAACAACATTATCTCGCATACTACAGATGGAGTTTATGAGGGAGTTGCTATTGGAGGAGACAGATTTCCTGGCTCTACGTTTATGGACCATGTGCTCAGATATCAGGACACTCCAGGCGTCAAGATGATTGTCGTTCTGGGAGAGATTGGAGGCGCAGAAGAATATAACATCTGTCAGGGCATTGCAGATGGCAGAATCACTAAACCAGTTGTGTGCTGGTGTATTGGAACGTGTGCCACCATGTTTTCATCTGAGGTGCAGTTTGGCCATGCAGGAGCGTGCGCCAATCAAACGTCAGAAACGGCTGTGGCTAAAAATCAAGCACTACGGGAAGCGGGTGCATTTGTGCCCAACAGCTTTGATGAATTAGGGGATGTCATCAAGTTTGTGTATGATGACCTTGTCGCAAAAGGAATCATTGTTCCAGCACAGGAAGTTCCTCCTCCTACAGTCCCAATGGATTACTCCTGGGCAAGAGAGCTGGGTTTGATTCGTAAACCTGCATCATTCATGACTAGTATCTGTGATGAAAGGGGCCAGGAGCTCATATATGCTGGTATGCCCATCACGGAGGTGTTCAAAGAGGAAATGGGCCTTGGAGGAGTACTGGGCCTGCTGTGGTTTCAGAGAAGATTACCACGTTATGCATGCCAGTTCATAGAGATGTGCTTGATGGTAACTGCAGATCATGGGCCAGCTGTATCTGGTGCTCATAACACCATTGTGTGCGCTCGTGCTGGTAAAGACTTGGTGTCCAGTCTGACCTCAGGACTCCTGACAATAGGAGATAGATTCGGTGGCGCACTAGATGCAGCTGCTAAACAGTTCAGTAAAGCATTCGACAGTGGCCTGCTGCCCATGGAGTTTGTCAACAAGATGAAGAAAGATGGCGTACTGATTATGGGGATTGGGCATCGTGTCAAATCTATCAATAACCCTGATATGAGGGTGCAGATCCTAAAGGACTTTGTGAAGCAAAATTTCCCATCAACCCAGTTACTTGACTACGCCCTTGAAGTAGAGAAGATTACCACTTCAAAGAAACCCAACCTTATTCTAAATGTTGATGGTTTTATTGGCGTGGCTTTTGTGGACCTCTTAAGAACATGTGGAGGATTCACACGGGATGAGGCAGATGAATTTATTGAGATTGGCACTCTTAATGGAATCTTCGTTCTGGGACGCAGCATTGGTTTCATCGGTCACTATCTGGACCAGAAACGTCTGAAGCAGGGCCTCTATCGCCACCCATGGGATGATATCTCCTATGTCCTTCCTGAGCACATGTCTATGTAAACCTGGAAGCTATTATAAGTATTTTGGATAAATATGTGGGaacgggtttattttattactttatcaTAGTGGGAAGGGGTAAATTATTCCATCATAACCAAAGAAATACACTAGCAAAACACTGACGAATAGTAGTTAACATTTATGATAAAGCATGGCAATTCTaaattgaatttataaaacGGTTGCTTGTAAAGCAAGCTTCATGGCACAGTGTCGCTAGCCATCTTATAATACTAACTCTTTAATGCACCTTCTTTTGCTTTGGTTATGATTAACAAATGAACAATCATAAATGTCTCTTCAGGCTGTGAGTTCTAATAGTCTGAATGAAGACACCGCAGCCTGTAGATGCAAAGCACCTAATTCTAAAGCACACTCAAATGTTACCTATTGGGAAATGTTAGCGTACACACCCTGAACCTTAAGTAAGCAAAATGGAGGTTCATACTAAGCACATTCATCACCAGCTGGGATAAATCACTCcaacaaaaaagtgaaaataaatcatCTTCTCTGGTGTTGTTTTTATGgtcaaaattacagtatttttaaaataaagttctttATTGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127056 lncRNA downstream 202235 5423084 ~ 5426511 (-) False lsm5
TU127055 lncRNA downstream 202619 5423084 ~ 5426127 (-) False lsm5
TU126767 lncRNA downstream 1175470 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1215384 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 1216546 4411340 ~ 4412200 (-) True G85569
TU127129 lncRNA upstream 68359 5727304 ~ 5731090 (-) True G85868
TU127155 lncRNA upstream 151712 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 161404 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 178427 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 179614 5838559 ~ 5838957 (-) True G85893
XM_043253920.1 mRNA downstream 1809 5621138 ~ 5626937 (-) True klhl11
XM_043253254.1 mRNA downstream 15539 5602681 ~ 5613207 (-) True dbf4b
XM_043253255.1 mRNA downstream 15539 5604270 ~ 5613207 (-) False dbf4b
XM_043253870.1 mRNA downstream 28083 5564608 ~ 5600663 (-) True adam11
XM_043254041.1 mRNA upstream 26581 5685526 ~ 5690389 (-) True buc2l
XM_043254040.1 mRNA upstream 26581 5685526 ~ 5690388 (-) False buc2l
XM_043254042.1 mRNA upstream 26581 5685526 ~ 5689989 (-) False buc2l
XM_043254045.1 mRNA upstream 44368 5703313 ~ 5733288 (-) True avl9
XM_043253671.1 mRNA upstream 77647 5736592 ~ 5746530 (-) True sult1st6
TU127052 other downstream 202235 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 202619 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 231834 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 231834 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 231834 5390608 ~ 5396912 (-) False G85779
TU127203 other upstream 326044 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 331968 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 392778 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 405353 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 1011374 6670319 ~ 6671247 (-) True G86049

Expression Profile