RNA id: XM_043254035.1


Basic Information

Item Value
RNA id XM_043254035.1
length 3359
RNA type mRNA
GC content 0.44
exon number 5
gene id slc16a5a
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11612742 ~ 11621002 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGACTGAGCTGCTCTGGGGTAAAGGCGAGAGGAAATGCCATGCCATCGCCCCGGTGCTCAAATTTCTCTACGTGTAGACTGCTTTTAAAGGAGCCGTTTCCACTTCATCGAGCTTTCCGTTGGGGGCACGCGGTTTACACGGATATGTAAAAGAACATGTTGTTACATTAGCTTTTGGTTAATCGGTTGTATCCTGAAACTGCTCCCACCCGAGGTGTCTCCTCCTACCGCTGATATGAGAGTCTCCTCAGCCTCCGCCGCACAGACACACGGCGCTGGCGCGGATGCTTAAAAATGCGCTGAAAAGGTGCACAGCATTATTTGGAGGATATTGAATATGCAAGAATGTGTTGCTCTGCCCTTCTGCTGCTGACGGCCCAAAGCTCCCCGGATCGAGTGGAAAAAACCCAGGCGGCAGTGACTTGGTTACCATCAGACTAGAAAATATGGCACCTCAGCAACCTTCTAGCATGGAGCAGCAGTCGGGGGAGCTATGTGAGCCTGAATCTGAGGAGGGACCAAAACAAGGACCAGGACCCCCTTCTGACCAAGTTCATCCAGTTGCCCACGATGCTCCAGATGGAGGCTGGGGGTGGGTGGTCCTGGTGGCTACCATCCTTGTCTTAGCCCTGACTCTGGCCTTCCCCTCCTGCATTGGCATCTTCTACTTAGATCTCCAGGAAGAATTTCAAGCCAGTAACAGTGAGACGTCTTGGGTGCCATCGATAATGACGTCAGTTTTGCATGCCGGAGGTCCTCTGTGTAGTGTGCTGGTGGAACGCTTTGGTTGCCGGGCAACAGTGATGTTCGGTGGAGTTCTGAGTGGTTTTGGGATGGCGGTCAGCTCTTTCTCGCATTCAATCGCTGACTTATACATTACCACCGGGGTCATCACAGGTCTgggtttctgtttcagtttccAGCCCGCGGTCACTATACTTGGCCACTACTTTGTGCGCCGTCGTCCTTTTGCTAACGCGATGTCCTCCACCGGTACTGCTCTGGGTCTGTCTACATTGCCTTTTTTAGGTGACTATCTGCAGAGTACGCTGGGCTGGAGAGGAAGTTTTCTGGTCCTCGGTGCTGTGCTGCTCAACTGCTGTGTTTGCGGAGCTGTAATGAGACCCGTCAGGCCTCGCAAGCCCAGAAAGTCGAAAGTCGAGGCGATAAGCAACGGTCCCATACCCGAAGGCGCGAAGGGATGCATGCTGGGGATCTTTCAGCGTTTAGCATCATCCCTCAGAAAACACATGGCCTTTGACCTCTTCTGCAGTAACCCGCGCTTCCGTGTTTTTTCACTGGGCATCACTTGGATGATGCTGGGGTTCGTGGTGCCGCTTATTTACCTGGTCCCGTACGCAACCGCTCACAAAATGGATCCAAGCCGAGCAGCCCTGCTGCTCTCCATCCTGGGCTTTGTCAACATCTTTGTGCGTCCTCCTGTCGGACTGCTCTTCAGCCTGTCCTGGTTTAAAGGTCGACACATCTACGTCTTCTCAGCCGCGCTCCTCTTAAATGGACTCAGTAATAGTATCTGCTGCATTTCGGCCAGTTTCTCAGTGCTGTTGATGTATGTGCTGACGTACGGGCTGTCCATGAGCGTGGTAGGCTCACTGATGTTCACCGTCCTGATGGACACGGTGGAGATGAGTCGATTCCCATCTGCGCCCGGCCTGTTGTCTATCATGGAAAGCGTTACGCTGTTAATTGGACCTCCTCTCGCAGGAATCCTCGTGGACCGGACTGACCAGTACACCTATGTGTTTGTGGCCTGCAGCATCACAGTGGCCTTATCAGCCGTATTCCTTATGGTTTCCTTTTACTGGCTGGACTCCCGTGACGCAGCCCAGAAGAACGGCACACCAGCGTCTGGATCTCCAGCTAAGCCTGCAGTCAGTTTGACCAAGGACTGCCAGTACAGCAGCGTGCCTACAGATGGGGACAAGACCAATAACCCGTCATCAGAAGCAGAAAAAATCACAGATGCCTGACCTGTATCAATGTCCTTCATGTCTTTGTTAATCGTGATCCGTATCAGGCACACAAATACGTTCCtttgccatttattagtagcaCAGAATGTGCTgtttataactgttttatttcagcattaaaCCATGGTTGTTCTGTATGTTTTTCATGACACTGGTGTTTGTAAACGTCACTGGTTTGCCTTATACAGTATATTAGTGTTATGGCATTACAGCGACCAATCCGCTAATGCAGTCCTTTGAAttcaagtaaatattataaacgCTTCTTCATCGATGATTCAGTTGACAGAATGCTGAAGTTGTTTGCACAGGAAATTAAGCTATCAAGTCAGGAAATCCTGAGCATTATGACTTATGTTTTCATCTCATGCTTATTATATTtcctcattattattatttttgccagTTACATTACTCTTCAACAATTTGAGGTTGATAAGATCTTTGATAAGTCTCTTATGTTAACcaaatctgcttttattttattagtattttaaataacactttttaaaatttttgtatattcaaattatttaaatttaaattattactgcGATGGTAAAACAGCCATTACtctggtcttcagtgtcatatgatccttcagaaatcatctggTGCTCtaaacatttattcttattataaatgttaaagacggttattttactcattttatttttgtaaatagaaagttgaaaagaacagtgttgatttgaaacaaacattttaatatgtccTTGCTGAATTAATTTCTCTTAAAAAATCTTGCCGACCTCAAATGTTTGAAAGGTAGTATTATCACAATTTGTTTTATGAACTTTTTGTGATATAATACCATGCACTGAGAGACCTGGCCCTTAAGGAAGATTGTTGGTCTGTTGCATCTACACGTCCAGTTCCCAAAGGGCAGGaataatactgtataataaataatattattgcaCATACACTCATAAATAATCAAGATTTAAAAGTCAGACTTGTTTTCTGGTTCTCAGCGATTAAGCATGACAATaccctttgttttttttggtttgctaGTATATTAGTTTCACTGGTTAGTGCTGAATAAGATTGTGTTTAAACTAAGGGTGCAAAGGGCTTATTTTTATTGAGTGTAATACATTACAGACGTCACATTTCACTTCATGCTGATTTATATGCAAACTCCTCATGTAAACTGGTTGGTCATCGTGGTCACTGTTGTTTTAATACTTTGCCAAAGCAAAAAATGACCAGCTTATATAAGCAGAAAGGGCTACCTGAGAATCATTTATATTGCAATGTGTattacaaagcatttatttgtgtactaaatttaaatttaataataaagatagacaataataaagacacatgctctgtt

Function

GO: NA

KEGG:

id description
K08182 SLC16A5; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252227.1 lncRNA downstream 32383 11579221 ~ 11580359 (-) True LOC122355534
TU129509 lncRNA downstream 32389 11579188 ~ 11580353 (-) False LOC122355534
TU129367 lncRNA downstream 293821 11316383 ~ 11318921 (-) True G87414
TU129370 lncRNA downstream 296744 11312472 ~ 11315998 (-) True G87417
TU129458 lncRNA downstream 329156 11278324 ~ 11283586 (-) False G87484
TU129560 lncRNA upstream 132047 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 178003 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 178590 11799592 ~ 11800481 (-) True G87552
TU129616 lncRNA upstream 269932 11890934 ~ 11894512 (-) True G87593
TU129629 lncRNA upstream 316039 11937041 ~ 11937682 (-) True G87603
XM_043254291.1 mRNA downstream 448 11607730 ~ 11612294 (-) False tap2t
XM_043254290.1 mRNA downstream 451 11607024 ~ 11612291 (-) False tap2t
XM_043254289.1 mRNA downstream 451 11607024 ~ 11612291 (-) True tap2t
XM_043254023.1 mRNA downstream 11261 11583162 ~ 11601481 (-) True acsf2
XM_043253908.1 mRNA downstream 62317 11536670 ~ 11550425 (-) True synpo2lb
XM_043254075.1 mRNA upstream 3096 11624098 ~ 11629888 (-) True kctd2
XM_043253148.1 mRNA upstream 9322 11630324 ~ 11633883 (-) True hexdc
XM_043253554.1 mRNA upstream 64787 11685789 ~ 11741961 (-) False zeb1b
XM_043253556.1 mRNA upstream 64787 11685789 ~ 11740556 (-) True zeb1b
XM_043253557.1 mRNA upstream 64787 11685789 ~ 11716700 (-) False zeb1b
TU129464 other downstream 290139 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 566860 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 2123430 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 2123430 9484946 ~ 9489312 (-) False ormdl3
TU128627 other downstream 2123452 9481630 ~ 9489290 (-) False ormdl3
TU129586 other upstream 211877 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 328269 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1028381 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1049623 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 1130902 12751904 ~ 12752678 (-) True G87845

Expression Profile