RNA id: XM_043254045.1


Basic Information

Item Value
RNA id XM_043254045.1
length 2533
RNA type mRNA
GC content 0.41
exon number 16
gene id avl9
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5703313 ~ 5733288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCACTGACGGTCAAGGGTGCGGAAGTTACAGACTCTACAGAGCAATcgcttgttttattgtttttttccttgtcTTTTGGACTTTATTCTAATTTTTACTAAGCTGATGGAGTCTCAATGTAAAGAGGAACTCGTGTTGCACATCGTGGTGGTTGGATTTCACCATAAGAAGGGCTGTCAGgtagAATTCTCATATCCTCCCATTATTCCTGGGGCAGGTCATGACAGTAATACACTCCCAGAAGAATGGAAGTATCTGCCCTTCCTGGCATTGCCTGATGGAGCACATAATCATCAGGAAGATACTGTCTACTTTCATTTGCCCCCTCTGGATGGACAGCAGAAATGTGTTTATGGAGTTTCTTGCTACAGACAGATGGAGGCTAAGGCACTGAAAGTACGAGAGGCAGATATCACAAGAGAGACAGTTCAGAAGAGTGTCTGTGTTCTCAGTCGATTGCCACTGTTTGGTCTGATACAGGCTAAACTTCAGCTCATAACTCACGCTTACTTTGAAGAAAAAGATTTCTCTCAGATCTCTATTCTAAAGGAGCTCTATGAGCATATGAACAGATCTTTAAGCTGTACAGCGCTGGAAGGATCACAGATTTATCtggGTCTTTCTGCCAGAGATTTGATTCTGCACTTTAAACACAAGGTTCTGATTCTCTTTAAACTGATTCTGCTAGAAAAGAAGATCCTATTTTACGTGAATCCAGTGAAGAAATTGGTTGAAACCCTGATGACAGTCCTGTCATTGTTTCCAGgtataATAGAGCATGGACTGGCAGATTCATCTCACTATCAGCCCCGGAAGAGCTTTTCAGATGACTTCAGTTCACCAGAAGTCATATCTGCAGATGAAGAGTCATTCACTATGTCCGCTACAGATAATACAGACATATCAAAAGATCTTGAGGGCAGGTATGATCGTGACCAGCCGGATCAGTCAAAGCCTTGTAACACCTCTTTGGAAACACACTACCTCCACCCTCATGCAGGAAGCTTGACGGACTCAGAGTTTGAATGGGAGAAGCTGGAGCCTCATGTAATGGATGAGAAGGAAGAGAAAGTAGACGCAGATCATTCAAATATGTTTGACACAGATTCAGGGCTGCCAATAACAGTACAGCCACAGTCGGCAACAGGACAGGGAACACTGACCTCGGGTCTGGTGTCTGGGTTACAAGAAGACCAGTATGGACTACCACTTGCTATCTTTACAAAGGGTTACTTGTGTATGCCTTACATGGCACTCCAACAGCACCACCTGCTGTCAGACATAAGTGTTCGAGGTTTTGTTGCTGGAGCAACCAACATCCTCTTCCGTCAGCAGCACCACCTGAGTGATGCCATCGTGGATGTGGATGAAGCTCGTATTCAAATCCATGACCCAGAGTTACGCAAAATGCTGTATTTAAGCACAGCTGATCTACGATTCGCTGATTATCTATTAAAAAATGTCACTGAAAACAAAGAAGATGTGTTTCTGGATGGGACAGGCTGGGAGGGTGGAGACGAGTGGATACGGGCACAGTTTGGCCTCTATGTCCACTCACTGTTATCTTCTGCTCTACAACAAGatcaTGAACGTCTATTGGCAGATTATGGAACTGCATTCACATCCGCCTGGAAAATCACACACAACTACAGAGTGTGGATCAGCAATAAGCATCCAGCCATGGCCAATATCACACCAGGCCATCCATTCCAGGGTCAGTACAGTGTGGCTGATATGAAGATCCGCTTGTCACATTCAATGCAGAACAGTGAGCGTGGGAAGAAGATTGGGAACGCTGTAATGTCGACAAGCAGAAGTGTCGTGCAAACAGGAAAGGCTGTTGgtCAGTCAGTAGGTGGAGCTTTAACCGTTGCTAAATCAGCCATGTCATCCTGGTTCTCCATGCTGGCTCAGCCGACTGCAGCGGTCGGTGCATCTGTGAGTGCATCTCCACAGTCTGCAGATTGATGTCTACTGTTGTACAAAATGATGAAGACAATATTGCACATATTATATTGCACATCTATTATTATATGAAAACGAGGAATGTTATAAGGCAAGAGagaataagattaaaaaaaaaaaaagtaaaataaacagatatcttgattttacattttgtacttGTAGTAGTTGTAATGGTAATAAGTTCTTGTAATGGTAATAAATACTGGAATAATGAAAGCATTTTCTTATTTCTGTggcaaaatgcattaattttagGTTTTCAGTTTGGGTTTGTTTAGGTTTTGGGACTCACCTTTTGTAAATCTTGAAGCCTGTCTATTTTGAGATCAGGTAACCAAAtgtttttatagatattttccTACAAATTATGACATGCATAATATCTAATGgcatatgaaaaatataataacattatagtCGCAATTGTTTTATCGTGCTTGTTGAAGAAGGACAACGtccatatatacaaataaaaacagtgacaCTATAGAGTTTGTTCATAAATTGGACCTTATCTGTGGTCAAATCAAATCCTGTAACACAATAAAGAGAATgaaatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127056 lncRNA downstream 276802 5423084 ~ 5426511 (-) False lsm5
TU127055 lncRNA downstream 277186 5423084 ~ 5426127 (-) False lsm5
TU126767 lncRNA downstream 1250037 4452755 ~ 4453276 (-) True G85572
TU126762 lncRNA downstream 1289951 4412624 ~ 4413362 (-) False LOC122355055
TU126764 lncRNA downstream 1291113 4411340 ~ 4412200 (-) True G85569
TU127155 lncRNA upstream 77369 5810657 ~ 5814446 (-) True G85889
TU127161 lncRNA upstream 87061 5820349 ~ 5821178 (-) True G85891
TU127162 lncRNA upstream 104084 5837372 ~ 5837674 (-) True G85892
TU127163 lncRNA upstream 105271 5838559 ~ 5838957 (-) True G85893
TU127200 lncRNA upstream 224290 5957578 ~ 5957779 (-) True G85922
XM_043254041.1 mRNA downstream 12924 5685526 ~ 5690389 (-) True buc2l
XM_043254040.1 mRNA downstream 12925 5685526 ~ 5690388 (-) False buc2l
XM_043254042.1 mRNA downstream 13324 5685526 ~ 5689989 (-) False buc2l
XM_043254031.1 mRNA downstream 44368 5628746 ~ 5658945 (-) False aclyb
XM_043254030.1 mRNA downstream 44368 5628746 ~ 5658945 (-) True aclyb
XM_043253671.1 mRNA upstream 3304 5736592 ~ 5746530 (-) True sult1st6
XM_043254385.1 mRNA upstream 14989 5748277 ~ 5762611 (-) True pkmyt1
XM_043254386.1 mRNA upstream 14989 5748277 ~ 5762603 (-) False pkmyt1
XM_043253168.1 mRNA upstream 141797 5875085 ~ 5878221 (-) True mylpfb
XM_043253059.1 mRNA upstream 284703 6017991 ~ 6022156 (-) True neurod2
TU127052 other downstream 276802 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 277186 5423084 ~ 5426127 (-) True lsm5
TU127021 other downstream 306401 5322478 ~ 5396912 (-) False G85779
TU127027 other downstream 306401 5322478 ~ 5396912 (-) True G85779
TU127020 other downstream 306401 5390608 ~ 5396912 (-) False G85779
TU127203 other upstream 251701 5984989 ~ 5987780 (-) True G85925
TU127212 other upstream 257625 5990913 ~ 6007107 (-) True G85930
XR_006252216.1 other upstream 318435 6051723 ~ 6054353 (-) False LOC122355418
XR_006252215.1 other upstream 331010 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 937031 6670319 ~ 6671247 (-) True G86049

Expression Profile