RNA id: XM_043254096.1


Basic Information

Item Value
RNA id XM_043254096.1
length 3327
RNA type mRNA
GC content 0.53
exon number 21
gene id tecpr1a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7853619 ~ 7868360 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGGTGTCAACATCGTGCAAATCACAGGCAGATTTCGCAAAGCCGAATGATCTCAAAATGACAACATAAGCTAAGTGCTTACACCCCGACACAGATAAGCTGTCCGTGTCTTGTCTCTGGCAGGGCGCATCATGCCGGGCTCCCTCCTGTGGGCTGTTGATGTGTATGGGAGAGTTTATAGCCTTTCGACAGCAGGACAGCAGTGGGAACACTGTCGCGATGCCCACTTGGAGTTCAAGCGTGTTACGGCTGTACAGCAGTGCTGCTGGAGCATTGCCTGTGACCACAACATCTATCTGTACGTTCACGCCAGTGACGTGCCCATCCGCTATCAAGAGGAGACGTATGAAAATCAGAGGTGGAACCCTGTCGATGGCTTCTCGGACCGGCTGTTGCCCAGTGACCGCTGGCAGTGGAGTGATGTCACAGGGCTAAAGCACCAGCCTCTGGGTGAGTTTCAGCTGCCCTCTGAAAACTGGGAGTGGGAAGCAGACTGGTACGTGGATGAAAACTTCGGAGGAGAACCCACAGAGAAAGGGggatGGACATATGCTATTGATTTTCCAGCCACttacacaaaagacaaaaaatggaACTCTTGCGTGCGCCGTCGCAGGTGGATACGATACAGAAGGTACAAGGCACAGGACACTTGGGTCAAGATCCCCTCAGAGCAGACCGAGTCTCTTCCAGACCCGTTTAATGACATCACTTGTGGTGGCTGGGAGATCACTGAGGAGCCCAGAGGGTGTTTGGCACTGTGGGCGGTCTCTCTGCAGGGAAAGGTGTGGTTTCGGTGTGGCATCAACCATCATAATCCCGAGGGCTCTGTTTGGGAGGAGGTGCCTGTGCCAGGGGAGGTTGTGCAGATCAGCTGCGGCCCCGGTGACCTGGTGTGGGCTGTCCTGTGGGAGGGTCATCTGCTGGTCAGAGAAGGCATTGGCAGAGATTGCCTGAAGGGGTCATCTTGGGTCACGGTGGAGTCTCCAAGCCCTGGTGTGGGTGCCGTACACGTAGCTGTTGGTGTGAATGTAGTGTGGGCTGTCACCAAAGATCATAAAGTCTGGTTTAGACGAGGTGTGAATTCTCATAATCCTTGTGGCTCAGGTTGGATAGGTATGGTTGGAGAGATGGTCATGATCAACGTGGGTCTCAATGATCAGGTGTGGGCTATTGGTTTTGAAGACCGGGCAGTATATTTTCGCCAGGGTGTGACTGCCAGCGAACTAAGTGGAAAGGCCTGGAAGGTTGTCTCTGTACCCAGAGATAGTGAACGTTCCCACTCTAGCGCCAGCGCAAGCAGTCTTCAGAGTGCTGGTTGTTTCTTTGGTGGTGAGGTGCGTCTGCAGTCCCAGGCATCAATGTTGAGTGATGCAGACCCTGAGACTGAGAGAGCTGGGGGTGAAGTTGTCCCAACACCTGAGATAGGAGATGCCCCTAAACCACGCATCCCCAAAGTAACCAGTGACAGCTTCATCTCAGAGCTTGTGTCTGATCGTGAAGGCCAAATCAGTCGCCGAGACGTCCCTCCAGCTGGCCCATCTATTCCTGAGGAAGATCACCCAGAAAAAGAGGTGGAGGACAGGACCTCCCCAGCCCAGGTTCTGTCTCCTAGCCAATCAGGCGGGGTGGATCCTCAATGGAGCAATGTGGACCTAGAGGAGGCCCAGACGCACCTCACAGCTGGACCTGGAGGAGATGCAGCTGAAACCAGCAGCCTGTCTTCTGTAGCAACTTATAACTTGGCCCTAGAGGAGCCTTACGGGCCAGATGAACATCCAAAATGGGCCTGGGTTAGCGGTGGGGGATGTTTGGTTGAGTGTCACACACAGCTCCACTGGTTCAACTCATCTGCTTCCACAGCCCTGAACTCGTCCATGCAGGCCATGTCTCTCTCCATTACACCCGCTCAAACGGCAGCATGGCGTAAACAGATATTTGAGCAGCTCAGTGAGCGAtccaagagagaaatggagaatTTCATGCATTATGAGCAGGCCATTGAACAGTCTGTGTGGGTGAAGAAGGGCACCATGCAGTGGTGGAGAGACTGGAAACCTCATAAGTGGCTGGATGTTCAGTTTGCACTAGAGCAGTTTTCAGGAGCGGAGGGTAACAAGGATGGGATTCTGTTTATCTACTACACATTTAACGTCGAAAAGAAGTATCTCCACGTGTTCATTAATGAAGTGACAATCCTGGTGCCGGTACTGAATGACTCCAAACACACGTTTGCCATCTATACAGCAGAGCGAACCAAACAGAGGTGGCCCATCCGCCTGGCTGCGGCCACAGAGCTGGAGATGCACGACTGGCTTGCTTTGCTTAGTGTGTCCTGCTGTGACTCTAGAGGTATTCAGGGCACTCCCTCGAAACAAGCCATCTGGTCGGTCACCTGTAAAGGTGACATCTTTGTGAGCGAACCCACAAAAGAACTAGAGGCATCTCCCTACCCTACACCGTGTGATCAGATGTTCTGGCGTCAAGTCGGAGGGCATTTGCGTATAATTGAGTCCAACAGTCTTGGTGTGGTGTGGGGGATTGGCTATGACCACACTGCCTGGGTCCACACAGGAGGCTATGGAGGAGGCTTCTTCCAGGGTTTGGCAAGCAGCACAGATAACATCTACACACAGACTGACGTGAAGAGTGTGTATATCTACGAGAACCAGCGCTGGAATCCTGTCACTGGTTACACTAACAGGGGTCTCCCTACTGACCGTTACATGTGGAGCGATGCCTCAGGTCTGAAGGAGTGcactaaaaacaacacaaaacctCCCTCCCCCAACTGGACTTGGGTCTCAGACTGGGCCATTGACTATGCTGTGTCAGGTGGCACAGACAGAGAGGGCTGGCAGTATGCAGCTGACTTTCCTGCGTCATACCACggaaataaaacattgaagGACTTTGTCCGCCGCAGACGTTGGGCCAGAAAGTGTAAACTCACAACGACCGGCCCCTGGCAGGAAGTTCCACCTATACCTTTGAGTGACATCACAATCCTGCCGTGTGGACCGAAGAGCACGGTGGAACAGGTGCCATTATGGGCCATCAGCAACAAAGGAGACGTCTTGTGCCGTCTGGGCGTCACTTCACTTACCCCTGGAGTAAGAGCCAAGTTCCTTATTTTCTAGAAGTTGGCTAATATGTTTAGCATTCAGTAGTTCCCATGCAAATCAGGGGTCGTCATGGTTACACGTTGGAACTGACCAGCCTTTCAAGTCGATTTCCATAGGTGCCGTCCACCAGGTTTGGGCCATCGCTAAAGATGGCTCTGCATTCTACAGGGGCTCTGTATCTGCCCAGAACCCGGCAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127809 lncRNA downstream 10341 7846481 ~ 7846832 (-) True G86375
TU127784 lncRNA downstream 148979 7707860 ~ 7708194 (-) True G86357
TU127783 lncRNA downstream 151690 7705221 ~ 7705483 (-) True G86356
TU127781 lncRNA downstream 158159 7698665 ~ 7699014 (-) True G86354
TU127756 lncRNA downstream 221029 7634638 ~ 7636144 (-) True G86333
TU127862 lncRNA upstream 19637 7887966 ~ 7888246 (-) True G86412
TU127863 lncRNA upstream 21974 7890303 ~ 7891221 (-) True G86413
TU127922 lncRNA upstream 186439 8054768 ~ 8055031 (-) True G86458
TU128016 lncRNA upstream 242864 8111193 ~ 8112713 (-) True G86516
TU128010 lncRNA upstream 280418 8148747 ~ 8154173 (-) True G86513
XM_043254201.1 mRNA downstream 17702 7838092 ~ 7839471 (-) False LOC122355671
XM_043254200.1 mRNA downstream 17702 7838092 ~ 7839471 (-) True LOC122355671
XM_043254203.1 mRNA downstream 20034 7835431 ~ 7837139 (-) True LOC122355674
XM_043254202.1 mRNA downstream 24021 7831396 ~ 7833152 (-) True pvalb3
XM_043254150.1 mRNA downstream 28188 7826602 ~ 7828985 (-) True pvalb9
XM_043254381.1 mRNA upstream 665 7868994 ~ 7885973 (-) False baiap2l1a
XM_043254380.1 mRNA upstream 665 7868994 ~ 7885972 (-) False baiap2l1a
XM_043254379.1 mRNA upstream 665 7868994 ~ 7885972 (-) False baiap2l1a
XM_043254378.1 mRNA upstream 665 7868994 ~ 7885971 (-) True baiap2l1a
XM_043253564.1 mRNA upstream 24456 7892785 ~ 7897664 (-) False nptx2b
TU127575 other downstream 468263 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 752955 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1185926 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1783741 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1802820 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 479833 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 649906 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 650651 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 742223 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 814723 8683052 ~ 8687548 (-) False plbd1b

Expression Profile