RNA id: XM_043254116.1


Basic Information

Item Value
RNA id XM_043254116.1
length 5240
RNA type mRNA
GC content 0.45
exon number 15
gene id prkcea
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11230187 ~ 11277491 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcagggagggagagagagtgagtgagtgagtgatagagagagggagagagagagagagagagagggcgaaCAGGGAGGAAGGCTGCAGCGTAAAGGACTAACATGAGCGTGTAGCTCAAACGCTTTCGCCTTCTCAGATCAACAAAGAAGCGAAGCAGCTGAATATCTCGGCGAGTGGATGGCAATAGTCTCCGAGCGGTTCGTCAGCAGACTGGGAGAAGGAGGAATCCCAAACGCCTCTCCCACTCAACGCCTATTGGAAAACGAATAGTACAAGACAAGCCCCGCTGAAGACCATCACATTTGGGATATTTTACTCTGTGTTATTGCCGATATTTTGCCTATTGGACTCGCACCTCTGCTCAGCGCTATTCCAGACGTAGGGAATTCGCTTGTTTACGTATGCTTCCCATTACGAGGGAAGACGGATCGTAAACAAAAACAGGAGCCTCTGGTTTTTGCATATCGCGTTTTTGCATCCTATTTGATTGTTCCGCTCAAATGAAAGAATCAGGTTGATCCGACTAGCGGTTTTGGGGATTAAATCATCACAGCATCCATCTATACGTGCATGTACACTGATGACGTGATGACATCTACGGGTATAGCGACTCCCTGAATCAAAACCTGCTTTTGAAACCGTCTGTTCTCGCAAAGAAGCCAGCTGCATCTCACTTGAGCGTCACCATGGTGGTTTTTAATGGAGTGTTGAAGATCAAGGTTTGCGAAGCTTTGGATCTGAAACCTACCGCATGGTCGCTCCGGCATGCCGTGGGACCAAAGACCCAGACCTTCCTCTTGGACACATATATGGCCCTCAACGTGGACGATTCTCGTGTGGGCCAAACTTCTACCAAGCAGAAGACAAATAGCCCAACTTGGAACGATGAGTTCGTAACAGAGGTTTATGATGGGAAGAAAATTGAACTGTCTGTCTTTCACGACGCACCGATTGGCTATGATGACTTTGTGGCCAACTGCACTATACAGTTTGAAGACCTGCTGCAGAATGGCAGTAGGCACTTTGAAGATTGGATCGACTTGGAGCCCGAGGGCAAAGTGTACGTCATCATCGATCTGACAGGATCTTCCAGTGAAGCTGCATCATCCaatgaaaatgaagaaagaGTGTTCCGTGAGCGGATGCGTCCGCGCAAACGTCAGGGAGCGGTCCGGAGGCGCGTCCATCAGGTCAACGGTCACAAGTTCATGGCCACCTACCTGAGACAGCCCACTTACTGCTCCCACTGCAGAGATTTCATCTGGGGTGTATTGGGGAAACAGGGGTATCAGTGTCAGGTGTGCACCTGCGTGGTCCATAAGAGATGCCATGAACTCATTATAACAAAATGCGCTGGCTTGAAGAAACAAGAAGACACTCCTGAAGAGgttGGCTCTCAGCGCTTCAGTGTAAACATTCCACACATGTTCAGCATTCATAATTACAAAGTCCCCACCTTCTGTGACCACTGCGGCTCCTTACTTTGGGGACTGATGCGGCAAGGCCTGCAGTGCAAAGCATGTAAAATGAATGTCCATCGGCGCTGTGAAAGTAATGTAGCTCCTAGCTGTGGTGTCGATGCCAGAAAAATCGCTAAAGTGCTCTCTGATCTCGGGGTGACGCCAGATAAGATATCCAACAGCACCCAGCGCAGGAAAAAGTTGACTCCAGGGCAGGACCCTCAGCAGCCCACGACAGAAGCCCCAACATCAGAGGAATCTGACCGATGCAAATCAGCTCCAACTTCACCTTGTGACCAAGcGGAGCTCGCAGAACTGGAGAGCATCCGTAAGGCCCTTTCATTCGGCCAGGAGCACaagtcttcctcctcctccgcaAGCAGCGGCATTCAGAGCACAGCGACCGAGGGCCGGGAGAACGGAGATGTGAAGACAGTCCAGACGAAGAGGATGAGTCTCACCGACTTCTCTTTCATCAAAGTGCTGGGCAAAGGCAGCTTCGGCAAGGTGATGCTGGCAGAGCTGAAAGGCACAGATGAAGTTTACGCCGTGAAAGTATTGAAGAAAGACGTCATCCTTCAAGATGATGATGTGGACTGCACTTTGACGGAGAAACGCATTCTAGCTCTGGCTAGAAAACATCCCTATCTGACCCAGCTGTTCTGCTGCTTCCAGACGAAGGATCGGTTGTTCTTTGTTATGGAGTATGTGAACGGAGGAGACCTGATGTTTCAGATCCAGCGCTCACGGAAGTTTGATGAAGCTCGTTCCCGTTTCTACGCAGCTGAGGTCACATCTGCGCTTATGTTCCTGCATCAACACGGTGTCATCTACAGAGATCTGAAGCTGGATAACATTCTGCTGGACGCTGAAGGCCACTGTAAACTGGCCGACTTTGGCATGTGCAAAGAGGGCATTCTGAACGGGGTCACGACCACCACCTTCTGCGGGACCCCTGACTACATCGCACCCGAAATCCTGCAGGAATTGGAGTACGGCCCGTCAGTGGATTGGTGGGCGCTGGGCGTTCTCATGTACGAAATGATGGCCGGTCAGCCTCCGTTTGAAGCTGACAACGAGGACGATCTTTTTGAGTCCATCCTCCACGATGACGTGCTTTATCCCGTGTGGCTCAGTAAAGAAGCCGTCAGCATTCTAAAGGCTTTTATGACGAAGAGCCCCAGTAAGCGTCTGGGCTGTGTGGTGACCCAAGGACTGGAGGAAGCCATCAAAGTCCACCCTTTCTTCAGAGAGATCGACTGGGTCTTGCTGGAGCAGAGGAAGATCAAGCCCCCCTTTAAACCTCGCATTAAAACCAAGCGCGATGTGAATAACTTCGACCAGGACTTTACCCGTGAGGACCCCGTGCTGACGCCAGTAGACGAGGCCATCATCAAACAAATCAACCAGGATGAATTCAAGGGCTTCTCCTACTTCGGAGAGGAGGCTTTGTCTTAAAGCCTAACTCGGTGTCTGTGAGCTCAAATATATGTTAAACACACCCACAAACACTCAAAAACCCACATCGCATCGCaatacatgaacacacactccaCAAATGTTCTGAAGACGGGGCTCAGACCGGACCAGAGCAGAACGGCCAGTTCCTGTGGTTCAATTCCCCTTtactgctgtttttgttcatttattctaCTCTAGATCTCctagaagtgaaaaaaaaactgctgcatATGGATCTCATCACAGGCCTCAACGAGTTTGACAACTAATCAGAAAATGAATGTTCTCCAGAGTCCAAGAGAGGAAGGGTCGGAACGCACTACCTTAAACCAAAATTGATACCAATGATTGTACTACAATTTCAGACACCGGTCGGGTCTTTGCAATGCCTCGATGGAAAGGTCTTGCCCTTGAGGAGGAATTTACCCTGCATACGTGACAATTGACAAATGTTGTGCTGTGCAGTCAAATGCCTTTTTGTGTATTCAGGTGACATTTTGGGagcaattttataaaataaacaaagacatttgtagtaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatattcaatcAGTGTTATGAAGGTCCATTTGGAATGAAGACCTGCTGTATATGGGTTGTGTTACGAAGTGTCGGCCTGAGTAGGTGTGTGCATGACATGTATGTGTTCGTGTGCATGTGTTCTGCATGAATGAGAGTGAGAGGCCCTTGCCCTCCTGAAGCTCTATGGctgttttcatgttgttttgCAATGACTTTTCATTTGCGCTCGACTGTGCAAAGACTacagtgtgtgcgtgcgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtgccgTGTCCCCCGCTATGCATACGAAGGTATAGTCGTGGACAGACAGACCAGTTACCATAGCTGTCCGGTCGATTTGTACAGAACGTAATATGTACATAGTATTCGCTCCAAAAGCCTGTGAAAGCTTCTTAGAGTAGGCAGTCGTTTGCATGGTCTTGCAAATTGTGTTGTTATTGAGTAGCATCAGTTTATGGAAAGAAAACCATGTTTTTGATATCTATGTGCAATACCCTGAACACATTTACCCTAGTTTTTTCAttactttcaattttttttctgtttcagtttctCTCTCGTACTGATTTTCTCGTGCCGCCTAGGTTAGAGCTTCACCAAAggctttctcgctctctctctctctctctctttcatgctTCTCTCTGCCGTTCTCATGTACATAGTTTGCTGAAGTACATAAGCTGTGGAATGTAGTGGAAAAATGTGTGAGTTcttaatttattcaatataCATGTAGCTATGCTTCCCTTTTTGTGTCAATAAGTCGTTCGTTTCCTTTGCAACTTTTTGTGTTACTTTATTTCAGACGATTGTTACTCTGTATAGCTTTCAAACCAGTCagtcatgttttaaattttGTGAACGCCCTGTAGTTGAATTATTTACTTGTGCAATGTGAAAGACTCTAAAGGAGAGTTGAacgaaatgaaaaaaagggtACATTTCAGGCGTACTAATTAAAACCTTCTGGAATGTGATGACTTTTGCTTTAGCAACTCAATGGCGATTCGAATAAGATGtgttacattgttattttaaaagtggTTGCTGACCTTTTATTTCTGTCTgaagtttctttttgtttcgttgttttgtttttttttttttttttttacgtgtctGTGGGTTGATTACGGTAGCTAGGTCAATGTTGCCGATTGTCTTTGAAGCCTTTTTCCCTCACAGACACTTTCCTGTCTGTCACCCTCACTGTTTCATGCCAAATGTCTTGTTCAGCTTTATTTTCTCCCGTcgtttcctttttaaatgtaaatgaatgaacttGATATATAGGACGCATCCATGATCTGTCTTCAAAGTCAAAACCGTAAATAAACTAAGAATTACCTCTTAAATTAAGTGCAAAGATTTCTCTGgctgaatattgaatatttgcgcatacagtattaaaatacataaatgtttcatatgTATGATAGTGCTGTATTATATACATCTGGTATTGGACTTTAGTTTCTGTATGGTGAAGCTTCATGTGCACAGAGGTATTTCTTTTCTGGATACACTAGCGTTATCTCGTAAGCATTTTACTATGTGCCAAATGTACTGTCATCTAAAGGATGTGAATGTTTTGTTTAACCTATTAAACCCCAAGATGTatgaaaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129121 lncRNA upstream 2272 11224765 ~ 11227915 (+) True G87238
XR_006252230.1 lncRNA upstream 99297 11122923 ~ 11130890 (+) True LOC122355611
XR_006252223.1 lncRNA upstream 141029 11083398 ~ 11089158 (+) True LOC122355479
TU129083 lncRNA upstream 141130 11082200 ~ 11089057 (+) True G87220
TU129085 lncRNA upstream 189281 11040668 ~ 11040906 (+) True G87222
TU129129 lncRNA downstream 99622 11377113 ~ 11392372 (+) True G87241
TU129130 lncRNA downstream 99622 11377113 ~ 11379318 (+) False G87241
TU129170 lncRNA downstream 160914 11438405 ~ 11515996 (+) True G87272
TU129184 lncRNA downstream 196355 11473846 ~ 11541104 (+) True G87282
TU129185 lncRNA downstream 196355 11473846 ~ 11541104 (+) False G87282
XM_043253278.1 mRNA upstream 17422 11210251 ~ 11212765 (+) True six3b
XM_043253794.1 mRNA upstream 65145 11141633 ~ 11165042 (+) True ppm1bb
XM_043253791.1 mRNA upstream 68177 11141624 ~ 11162010 (+) False ppm1bb
XM_043253792.1 mRNA upstream 68177 11141803 ~ 11162010 (+) False ppm1bb
XM_043253793.1 mRNA upstream 68177 11142269 ~ 11162010 (+) False ppm1bb
XM_043253528.1 mRNA downstream 781 11278272 ~ 11298505 (+) False epas1a
XM_043253526.1 mRNA downstream 785 11278276 ~ 11298505 (+) True epas1a
XM_043253527.1 mRNA downstream 787 11278278 ~ 11298505 (+) False epas1a
XM_043253530.1 mRNA downstream 1665 11279156 ~ 11298505 (+) False epas1a
XM_043253593.1 mRNA downstream 28581 11306072 ~ 11320705 (+) True glud1b
unassigned_transcript_1922 other upstream 145817 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 648432 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 650191 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 739015 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 742846 10481615 ~ 10487341 (+) False LOC122355192
TU129235 other downstream 417353 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 659351 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 1455273 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 1482883 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 2164452 13441943 ~ 13444915 (+) True G88016

Expression Profile