RNA id: XM_043254117.1


Basic Information

Item Value
RNA id XM_043254117.1
length 5657
RNA type mRNA
GC content 0.54
exon number 20
gene id usp54b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11440769 ~ 11528254 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGGCTGCGGCGCTGGATGGCGCTGGTGGAAATTTGGGAATGCGCGGTCAAGATTTCTCCCGGGTTGAGTTGAGCTCGGACAGGACTCGAGACTGACTGCATCTGCGTGCGAACAGTAAGatcaGCCTGGGCTAAGAGAGAAGACACTGCGAAGGCTCAGAGTCGGGGAGCAGGCAGCGGACGGAAGGCGGACATCTCAGCGTTAGGACAGTGTCAGTGGACCGCACTTCCTCCAACAAACACTGCAACAGTCACACAGCTGGCTTTAACCAGGCCAGCTTGACCCCACTTTACCATCTCAGGTGTGGGGAGCCATTTAGTGGCCACAGGCAGGCATTACTGAGATCCTCCTGCCTCCTTCGTGAGAAACCGTCACTTGTATATTCGCACCTTTTACCAAACCCCAGCAGATTCCTTCattatactttttgttttgtaatcaCTGAACAAACCCTCTCTCATGGGAGTAACATAGAGACCAGCCCAACACAGACACtctctgctctctttctctctcgccttcacacacacactcacgctcacacacactcactcgtcTGCACCGTGTTCAGGATGCCCTCCTCCTCCAGCGTGATTAGCTGGGGAAGGACGTGGCTCTTGTGGTGATTGGAGGGGGAGCGGAGCGGAGCTGGACCCATGTCGTGGAAGCGGAACTACTTTGCTTCAGGCAGCAGCGGGCTGCAGGGGATGTTTACCCCACGCACCATGACCTCCATCGCTCCCAGCAAAGGCCTGAGCAATGAGCCGGGTCAGAACAGCTGCTTCCTAAACAGCGCACTGCAGGTCCTTTGGCATCTCGACATCTTCCGCCGAAGCTTCCGGCAACTGAACACCCACAAGTGCATGGAGGACTCGTGCATCTTCTGCGCTCTGAAGAGCATCTTCGCCCAGTTCCAGTTCAGCAGCGAGAAGGTGCTCCCATCGGACGCTCTGCGCAGCGCTCTGGCCAAAACCTTCCAAGACGAGCAACGCTTCCAGCTGGGCATCATGGACGACGCGGCCGAGTGTTTCGAGAACCTCCTGATGCGGATCCACTTCCACATCTCGGACGAGACCAAGGAGGACATCTGCACAGCCAAGCATTGCATCCCACATCAGAAGTTTGCCATGACACTTTTCGAACAGtgtgtttgtaataactGTGGAGCCACTTCGGATCCTCTCCCCTTCATTCAAATGGTGCACTACATCTCCACCACCTCTCTCTGCTGCAGTAACCAAGCTGTGCGAATGCTGGAATGTAAGGAGAAGCCCACGCCTGACATGTTTGGAGAGCTTCTCCGCAACGCCAGCACCATGGGAGACCTACGAAACTGTCCGAGTAACTGTGGCGAGATGTTGCGGATTCGCCGGGTTCTCATGAACTGCCCGGAGATCATCAGCATCGGCCTGGTGTGGGACTCGGATCACTCTGATCTTGCCGAAGACGTCATCCACAGCCTGGGCACGTGCCTGCGGTTGGGTGATCTGTTCTACCGTGTGACGGATGAAAGGGCCAAACAATCGGAGCTCTACCTTGTGGGCATGGTTTGCTACTACGGCAAGCATTACTCCACCTTCTTCTTCCAGACCAAGATACGCAAGTGGATGTACTTCGATGACGCACATGTGAAGGAGATCGGACCTAAGTGGAAGGATGTGGTGTCGAGATGTATAAAAGGCCACTACCAGCCGCTACTGCTGCTGTACGCTGACCCTCGAGGGACGCCCGTGTCATCGCAGGACATGCTGGCAGCACAGCTGGACCTGCACCACAGTAGCAAGGCTGGCTATGACAGCGAAGACTCCGGGAGGGAGCCCTCAATTTCAAGTGACACACGCACAGACTCTTCCACAGACAGCTACAGCTACAAGCACTCTCGATCACACCATGAGTCCATGGCCTCCCATTTCTCTTCTGACTCTCAGGGAACTGTGGTGTGTAATCAGGACAGCAGCGGTTCCCAGAACAGCATGGACACTGCAGgggAGGTTCTTAAAGACCAGGCCACTCCTCTTTGTACGCTGAGACCCTCTTCTACTGGCCATCTGCAGGACTATAAAGAGACTGTAAATATGATCCACAGCAGACCCCTCTCATCATCCTCTAGCTCAGGGGTGGGCGGCTCGGAGGCTGGGGCGCGGGCGAGGGATTGGGAAGACGAGAGCACCAGCAGCGAGTCCAAGTCCAGCTCCAGTGGAGGGCGTTATCGGCCCACATGGAGACCCAGAAGAGAGGCTCTGAACATTGACAGCATCTTCAGCCGGGAAAAGCATCGGCCGGCCGGCTATGCCACTCTCGGACCTTCCCCGCTGCCGGAAGACCCGATGTCACCAGGGCACAGTGAGCTGCTCTCAGGGGCTGCGGCGGAGGGGTCCAACACTGCAGCAGCAGAAATGGGGGGCATGACCGATGGCTCAGGGGGCGTGCCAGAAACGGAAGTGGAACATCTACCGATCCCACCACCTTTAAGAGGCGTGGAACAGCAGCCTCGGCTGATCCAGAGAATGGAGAGCGGCTACGAAAGTAGTGAGAGGAACAGCAACAGCCCCATCAGCATGGATATGCCTCTCAGTGACAACCCAAGCACCAGTGCTCACAGGGACAGCGGCAGTAAGAGACCCGTGACTTCTGGGCCCTCCTGGCGCACAGTGCCCAAATCCAAAAGCAGCAGTGCCATCCTGCAAGACCTCAAATCACCCACCTGGAGCAGCAGTCCACTGAGTTTGGGAGAGGGACGCAGCGAGCTGGATGAATTGCAAGAGGAAGTTGCTCGCAGAGCCAGGCAGCAGGAGCTCCAGAggaagaaggagaaggagagagaagcaGCACAGGGCTTCAACCCCAGACCCAGCAAGTTCATGGACCTGGACGAACTTCAGCACCAGGGGAAGGGGGGCAGTTTTGAGCACTGCCTGGCGGAGGCTGACTCTCTCTTAGAGCAGTCGCTGCGCCTGGAGCAGGCTGGGGATACAGCTACAGCCCTGGCGCTCTCCCACCACGCTGTGTCTAAACTAAGATTTTCCATGCATGAGGGCAGTGCTAACACTCATAGCAGGACAATGGCTGCTGACGCCAAGCTGCAAAAATGCATGAGGAGAGCGCGGGGCCTACAGCAGCGCATGCAGCAACAGCAAGAGCAGCAGCAGGAGCCCAACCGCCCACAGGGGCCCACCAGTGAACAGCCTGGCCCGGTCCAAGTATTGTTGACAGACAATCAGGAAGAGGTCTGGGAGACCAATCAGGATTCTGTGCTTGGCCCACCCTCTCCTCAACACATGAAACCACCCTCATCTTGTACAAACTCCCCATCTCAGCCTTCTAGCCGCCCATTGCTCAATCCCAGACCTGCCTCTTCTCAGTCACAGCCCCAAGAGCGCGATGAACGCAACAATTGGACAACTCAGAATGAGGACGAATGGGGTGGCATCAGACTATCAGATGTTCTCCAAGCTTCAGGCATTCGCATCATGCCCATACGCAAGCACCTTGCCATATCTCTGCCCTCTTTGCCTCTTGATTTCTGGGGTGTATTGGGAGAGGATGAAGAGGTCTCCAGCTGTCAGCACCCTCAATCTCCACATCCTCCTTTGTGGCATGGCACTGCAGATAGTCCAGACCGGATTCCCCAATCCAGCAATCCCAGTCCACCACCCACCTCTGTCGATGAGAAAGGGCCAGTGCCCCGAAGAGCCCCCATATGGCAACCCCTGTGTGCATCTTCCCAGCCCTGCACCAAATTGACTCCCCCTGTTGCTGCTCGACATTGGTCCTCCTGGAGCCTAGACCGTCCTGATGCTGTTGTCAACCCCTATGACACACCTCCTGATCAGAACCAGCAGACAGGACCTGCCCTCTCACAACACACACCTGGAAGACCCTATGCACCTCACAGTCCCATGAGCACCAGGAAAAAGACCATCCCTAAGTACTCAAACTTCCAGAGCATGGAGTTGGAACCCACAGAGGCCGAGGACCAGGAACTCTCTGAATTAGACTCACTTTACCAGGCTAGTCTGCAGGCTGGCCCGGGTCCTGGTCGAGCCCTGCGTGGTACCAACTCACCTGCTGTTCCAAGACCAGTACCCCCTGCTGCACGAAAGCTGCTCACTGGAGTCGGACGCTCTCGGACCCCCACAGCTGAACTTGAGAGAACTGCTTATGGACCACCAGGTTGTTGCAGCCCTACTGGATACATGAACATGCCCCTGTCGGTGGCCCATCAAGAGCCTCAGTCAGGAGACGAAGACCAGTATGATGCGGATCACCTGCGCCGTATTGCTCGCAGCCTGAGTGGGACGGTCATTGGTCGTCGCCAGAACCGTCTCACCGTCTCCCGAAGCTTTCTGGGGGACGCCGGGGTTATGTCATATCACAACTCCATGTACTCACCTAGTTGCCTTCAGTTTCCATTGTCGCATTCAGACCTCCATCTGCTCCAACCCAGCTGTCTTCACCTCCTTCCATCATCTTCACCCCTGTCTCAGCAGCCTGGGCCTTCCAGAGAGGCCTCAGGTAAAACTCACTCTCGTTTTCCACATTCATAACCACCTCTTCCATTCAGAAGGCCATTTCACTCTTGTTCCGCATTCATGTCTCTGCCATCGCATTGCAATTGAGTCCAGGTGCAGGCCCCCCCCACCCCATTCGCTTCATTTTCGTTTCCTGCTGTTAAAGGAGCTCCTCTTTcgttgttgctttttttctttgattggTCTGGTTCCTGTCCTTCACACTCCATCCTACCCCACTGCAGGACGTCTCCAGAGGTTCTCCGAGTTTCTGGCTGTGTTTGACCGGCGTCAAGCTCTCTCCAGTGGGAAGCACTACGGTCCAGCAGTGAGGCGTATTAGAAGACATCCTCTCTGAAGTTCTCACCCAACCAATTGGCTTTGGACCAGGTCCTCCAGCCCTGGAACATTTCCACAGATGCGTTCGTTGCCCTGGATGACCCTTCCGGACACCCTATCCCATTCCCTTCACAGTTTTCTGGAGGACTGGAAGGagaacatccagagacctgatgCCATCCTCAATCACCCTGCGCTCTGTAATGTTTCTGGGATAATGCCCTTCAGTTACCCTGCTATAGTCGGTAAATCTTTCCATGCAGAAGCCCCTGAAGCTCGATCCATAGCATGAGGGAAAGAGAGACCGAAaccaactttttttgtttatgagcACTGGGATGGCTCGAACCTTTGGggctgaggtgtgtgtgtgtgtgtgactaacCAATAGTCAGACCTGCAGCATGCAATGATAGGAGTGTGGGGTCCAGTTAAAGACTCCCACAGTGAGCCATCCAACCCAGAGCACTTAACTTAATTAACCCCAACATTCAATTAACTGCAGAGGAGAAGCATACGGTAACTCCTTGCTGCACTAGAtggtaaatgtgtgtttgtgtgtgtgtatgcgtgtgtgcatgtgttggGTGGTAAAAGGGGAGGGGCTTATTGTAACCCTACCCTCATTTGTACTAcaggtcaaaagtttggaatgatTCAGATTTTGTAATACTTCgatttcaaaaatacagtaaaattgtgaaatattattactattcaaaacattgtttttcattttcatttgttgtttttaacatggataataataatattaataaatgtttcttgagcaccaaatcagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129367 lncRNA downstream 121848 11316383 ~ 11318921 (-) True G87414
TU129370 lncRNA downstream 124771 11312472 ~ 11315998 (-) True G87417
TU129457 lncRNA downstream 157183 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA downstream 157183 11278324 ~ 11283586 (-) False G87484
TU129455 lncRNA downstream 167467 11271741 ~ 11273302 (-) True G87482
TU129509 lncRNA upstream 50934 11579188 ~ 11580353 (-) False LOC122355534
XR_006252227.1 lncRNA upstream 50967 11579221 ~ 11580359 (-) True LOC122355534
TU129560 lncRNA upstream 224795 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 270751 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 271338 11799592 ~ 11800481 (-) True G87552
XM_043253225.1 mRNA downstream 20563 11394257 ~ 11420206 (-) False opn4b
XM_043253224.1 mRNA downstream 20563 11394257 ~ 11420206 (-) True opn4b
XM_043254262.1 mRNA downstream 48379 11375795 ~ 11392390 (-) True ldb3b
XM_043254263.1 mRNA downstream 48386 11375795 ~ 11392383 (-) False ldb3b
XM_043253748.1 mRNA downstream 65963 11344459 ~ 11374806 (-) True bmpr1ab
XM_043253909.1 mRNA upstream 797 11529051 ~ 11534953 (-) True myoz1b
XM_043253910.1 mRNA upstream 797 11529051 ~ 11534952 (-) False myoz1b
XM_043253908.1 mRNA upstream 8416 11536670 ~ 11550425 (-) True synpo2lb
XM_043254023.1 mRNA upstream 54908 11583162 ~ 11601481 (-) True acsf2
XM_043254290.1 mRNA upstream 78770 11607024 ~ 11612291 (-) False tap2t
TU129464 other downstream 118166 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 394887 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1951457 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1951457 9484946 ~ 9489312 (-) False ormdl3
TU128627 other downstream 1951479 9481630 ~ 9489290 (-) False ormdl3
TU129586 other upstream 304625 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 421017 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1121129 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1142371 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 1223650 12751904 ~ 12752678 (-) True G87845