RNA id: XM_043254151.1


Basic Information

Item Value
RNA id XM_043254151.1
length 3798
RNA type mRNA
GC content 0.45
exon number 11
gene id nhlrc2
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13381644 ~ 13398387 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGGGAATCATGGCGTCGTACAGCAAGCTGTCAGATCTTTTCACCATACAGAGCCAGCTAGACTATGCTTTAGAGGACGCGGCGACtcaaaaagagaaggaaaatcTCGTATATCAGTATCTGCACAAAATAGACGAAAAAGACGATTTGATTATACCGGATTTTGAAGAAGGACTGGAATGGTTGAACACAGACGCCGCACTGTCACTCAGGAAAGACTTGTCTGGCAAAGTGGTGGTGCTTGACTTCTTCACCTACTGCTGCATAAACTGCATGCACCTACTTCCTGATCTACACCAGCTGGAGCAAAGTTACACCATAGAAGATGGTCTGGTTGTCGTAGGTGTGCACTCGGCTAAATTTCCCAATGAGAAAGTCCTACAGAACGTACGCAGTGCGGTGCTGAGATACGACATCACCCATCCCGTGGTGAACGACAGCGATGCACGTCTGTGGCAGGAGCTGGAGGTGTCATGCTGGCCCACCCTAGTGGTGCTGGGACCCAGGGGAAATCTGCTTTTCTCCCTCGTGGGTGAAGGCCATCGAGAACAGCTCTTTCTTTTCACTGCGGCCTCCCTGAAGCACTATAAACAACAAGGGCTGCTCAAGGACCATGATGTGGGGATCAAACTATATAGAGACTCCCTGCCTCCCTCCATCCTCTCTTTCCCTGGGAAAATAGCCATGGACCCCAGCAGCAAGCGGTTAGCTATTGCCGACACAGGACACCACAGGGTACTGGTGGTCTCCAATACTGGGCAGCTGCTGCACACAGTAGGGGGTCCCTCAAGTGGGAGACGAGATGGAAATTTCTCTGAGGCGCAGTTCAACTCCCCACAAGGGGTGTTCATAAAGGGAGACACAGTCTACGTGGCTGACACTGAGAACCACCTTGTTAGAAAGATCAACCTTTCAGAAGAAAAAGTCTCGACCTTAGCTGGCATTGGCGTTCAAGGCACAGATAAAGAAGGTGGAGCTCTGGGACCACAACAGCCAATCAGCTCTCCCTGGGATGTTGCTCTTGGCAACACAGGTGGTGATATATTGTGGATAGCCATGGCAGGAACGCATCAGATCTGGGCTCTCTTCCTGGAGGACGGGAAGCTTCCCAAAGGGAGCGACAGCAAAAAAGGAACATGCGTGCGCTTTGCAGGCAGTGGGAATGAGGAGAACAGAAATAATGCGTACCCTCATAAAGCGGGCCTGGCCCAGCCGTCAGGCCTGGCTCTTGCCCCGACTGAGCCCTGGGAGTGTCTCTTTATCGCTGACAGTGAGAGCAGCACCATTCGTAGCCTTTCGCTGAAGGATGGCGCAGTCAAACATGTGGTGGGGGGAGAGAGAGACCCTCTGAATCTGTTCGCTTTTGGAGACGTTGATGGTAAAGGCATAGATGCAAAACTGCAGCATCCATTGGGAGTGTCCTGGGAAGAGGGCAACAGTCTTCTCTATGTAGCCGATTCGTACAATCACAAGATCAAAGTGGTAGATCCGAAAACTAAGCAGTGCAGGGTGCTTGCAGGCACAGGGAATGCTGGGAACGGACTTGGCCCGAGCTTTCTGGAGTACAGCTTCAACGAACCTGGAGGCTTGTGTCTGGGTGAAGGAGGAAAGCTGCTGTATGTGGCGGACACCAACAACCACTGCATCAAAGTCCTGGACCTGGAGACCAAAACTGTCTCTTTGTTTCCGATTGTAGTTCCGCACGAGGTTGATGCTGTCAAAACCACAAGCAGCACACCTGCAGTCAGAAAGCTTCCCAAGCTTCCCAAATCAGCCCCTGTCCTTACGATGCCATCAATCGCAGTTTCTTCAGGACAGTCAGTGACTCTTTTGCTGAAATTGGCACTTCCGCCTGGGACCAAGCTCACCGAAGAAGCCCCTAGTTTCTGGAGCTTATCTGCAGAAGGTAATGAGTGGTTACTGGAAGAGCGAGCTGTGACGGGGAGCATCAGTGATCTCTCTGAACCGGTCTCGATCGTCTCATCCATCCCAGCGGCCCCTGTGGCCCGAAACCCCACACTGACGCTCGACGCCTGGGTCTACTGCTGCCTTTCTGAGGGCGGGGCTTGTATGATGAAGGCAGTGTCCTTTAAACAGCCTTTTCTGATTGGCTCTACATCTCCGGAAGGTTCTGTTGCCGTGACGCTGGAGCATGCCTTTTAAAATAAGCGTCCACCCAAAGGATCTTGGAGCACATCTAAAGGGATACTTtaccaaaaaatttaattctgtccCCGTTTACTCATcctaaaatgttgttccaaaactgtCTGAATTTCTTCAGTGAAGCACAAAAGAATGTTTTGAAGAACGCTGACAATTTTTTTCCTTATAATTCTGCAAAAAAGAGTTAAGCTAAACTTCATCTGTTACAAGtatatatatctcacaaatTGCTGTTTTCTCACTATTCTGGGGGGTAACGTCAGGACTGTGAGAAAAGTTTCAATTGTGAGATACAACCTTAGTTGCGGTGGGGAGAAAAAGGTCAAAAAACGGTGGAAAAaaattatctgtttatttttgtatcctGCCAGTGAAAACAAGTCAATTTTTGACCCCGctgactttcattatatggacaaaaatagatttttccttccatagaagaaaaacagaacGACGTGAGGATGAGCAAATGATTTTTTAGATGAATATCCTATTAACATTCAAATCACATCCTGCGGTTAACACATACTGTAGTAATCAGACACTTCACATGCTCGTCATCAGGCTAATCAGACAGATTGCAAATACTAATTGTAGAGTCAGGATCTGACTGTTAAATCTTGACAAATATTGAACAAAGTGCCTCATTCTCAtcagcaatatttttttgtggttcTGCTAGGGGTGTTTCACATGATTAAGCTTGTGTAATGCCTTTGTCAAATAGCCTGGTATCATTATCAGCCATCTTCATTCAGTCACTCACATGCTCTCGCacaataatatttgaaaaaaaatgcagtgtagTGTAAAATGTAGCCAGTGTCAGCTGTTCTGACAGCCGTTTATGGTTGGCTTGgctcatattattattatttcccgcactgcatttttttctcctaaCTATATGATACCGTAAGTCAGTCTTGTAAATGTGCAGTCAGacttaatgttatttaattggaattatttattattgtttaccAGGCTTGAGTGCCTTTTCAATGAGCAATACACTTTGTATGAATGAACTATGTGTTGGAAATCAAGCGGCGACATTAATTTCAGTGTTCAGCCTCGAACGGAATGGAATCATGGGCCATTTACATCTACATATTAATGCTTTCTGAAAGAACAGCCTCTCGGTGCTGTTAAACATTAACAATGGAGCTACAATGTATTCCTGATACATGATAGATCATGCGCTTgcaaatcatgcccagtgtgaATCAGACACTGTAGAAATTTCCTCTAAAATGGTTTTCGCTTGCTATTCCTGTCGCAGTTCTAGCCtgtaaactatttaataaaaacaaaatttatcTCTCACTCTTTTGAGGGCAGCTCTTTTATACAGCCTCCAAATTCTGCACTTTAACAGATTAATTTGGATGCAGTGGActaataaagtttattttcccAGCATTTGTGTGTTCAGCATTTTCATATCCTCTTCACTACACACAAGGACCAGTGCATTCATTGTAAATGACAAAAGACCATCTGTTCCAGCAGAGATGCTTCATGGTGAGTTTtctgtggtcatttttttttaattgacttttttttttgaggtttgtaaattaaaattaaatcataataaaaataaagcaggtATTATGCACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130240 lncRNA downstream 13324 13365953 ~ 13368320 (-) True G88003
TU130017 lncRNA downstream 573998 12804696 ~ 12807646 (-) True G87860
XR_006252231.1 lncRNA downstream 742908 12613150 ~ 12638736 (-) True LOC122355629
TU129849 lncRNA downstream 894249 12438750 ~ 12487395 (-) True G87746
TU129766 lncRNA downstream 1034578 12344898 ~ 12347066 (-) True G87695
TU130253 lncRNA upstream 31019 13429406 ~ 13432195 (-) False LOC122355808
TU130263 lncRNA upstream 35507 13433894 ~ 13434125 (-) True G88019
TU130280 lncRNA upstream 60069 13458456 ~ 13459865 (-) True G88034
TU130281 lncRNA upstream 61758 13460145 ~ 13461245 (-) True G88035
TU130329 lncRNA upstream 140304 13538691 ~ 13539383 (-) False entpd1
XM_043253077.1 mRNA downstream 6156 13372489 ~ 13375488 (-) True adrb1
XM_043253061.1 mRNA downstream 46852 13325153 ~ 13334792 (-) True tdrd1
XM_043253062.1 mRNA downstream 47324 13325153 ~ 13334320 (-) False tdrd1
XM_043253064.1 mRNA downstream 47524 13325153 ~ 13334120 (-) False tdrd1
XM_043253063.1 mRNA downstream 47524 13325153 ~ 13334120 (-) False tdrd1
XM_043254222.1 mRNA upstream 7406 13405793 ~ 13410281 (-) True plekhs1.1
XM_043254219.1 mRNA upstream 15794 13414181 ~ 13418256 (-) False LOC122355682
XM_043254220.1 mRNA upstream 15794 13414181 ~ 13418215 (-) True LOC122355682
XM_043254221.1 mRNA upstream 15794 13414181 ~ 13418193 (-) False LOC122355682
XM_043253053.1 mRNA upstream 20330 13418717 ~ 13422958 (-) True LOC122355076
TU130001 other downstream 628966 12751904 ~ 12752678 (-) True G87845
TU129915 other downstream 706172 12649383 ~ 12675472 (-) False prr15lb
TU129914 other downstream 706172 12670625 ~ 12675472 (-) False prr15lb
TU129639 other downstream 1430489 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 1546032 11832879 ~ 11835612 (-) True G87569
XR_006252221.1 other upstream 213347 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 213347 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other upstream 213349 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other upstream 215760 13614147 ~ 13691338 (-) False tcf7l2
XR_006252179.1 other upstream 574495 13972882 ~ 13976511 (-) False srsf2a

Expression Profile