RNA id: XM_043254161.1


Basic Information

Item Value
RNA id XM_043254161.1
length 2087
RNA type mRNA
GC content 0.50
exon number 2
gene id kcng3
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11049679 ~ 11054806 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattgctaaaaaaaatcacagagaaaatgataaaaagcaaTAAGTTAGTTTAGCTGTTTGAATACTAACCTAATTACCAAGCCTAATGTTTTACACAACACCGCTAGCCTGGATCAATGTCTAATTTTAGTTAAGGGGAAAAAGCgtcattgattttaatattgaaCATTTCAGTCCGATGTGACGTCCTTCTGCTCCACTCCACTCCCAACAACAGAGACGTGAAGTCAAGCAAGTTCACTTATTAATCCCAGACATGCGTCGTGAAAGACTCGCGTCGACTTCGGGAACGCCCGTTCTTCTGGAGCGCGCGACCGAGCGCAATAGGCTTGTCGACGTGTGACATCACTGCATGAAACAGCCCACCGAAGGCTGGAGTTTAGATGATGCACAAAGCCAGAAGTCACTTTTCCACGGTTCTCCTAACTGACACGCGCTCaacctggggaaaaaaatattttaaaatctgacaCACTGAGTTGGACTCGCGACTTTggagctgttgttgtttttgttttgggttttttcttgttcttctcGTGCTCGGATTTTAACTATGGCTATCATTGAGCCATACTGTGCGTCGTTTCTCTCGTTTTCCCTCGAATCGGTGATGCAAATCTGATCCGAAATGAAGTTTGGGAAGAATATATGCATCCTGAACGTCGGTGGCACCAAGTACGCCTTCACAAGAGAAGTTATAAAGGATTTTCCCCTCCGAAGAGTGAGCAGGCTCCACAGCTGTTCCTCCGAAAAAGAGGTCCTGGAGGTATGTGATGATTACGACCGAGAGAGGAACGAGTTTTTCTTCGACAGGCACTCCGAGGCTTTTGTCTTCATTATGCTTTATGTGCGATCTGGAAAGCTCAGGTTCGTCCCGCAGATGTGCGAGCTCTCCTTTTACAACGAGATGATCTACTGGGGTTTGGAGAGCTCGCATTTGGAGTTTTGCTGCCAGCGACGACTGGAGGATAGGATGTCCGACACTTACACGTACTTTTCAGAGGAGGACATCAAGGCCGAGGTGGAGTCCAGAGGTGAGGAGGATCAGGTCGCCAGGTTCGCCCCCGAGAGAGGAAACGCGCGGTGGCTGGAGAGGATGCGGAGGACTTTCGAGGAACCGGCTTCCTCTGTCGCCGCGCAGATCCTGGCATCGGTGTCAGTGGTTTTTGTCATTATGTCTATGGTCATCCTCTGCGCGAGCACTCTGCCGGACTGGGACACAGCGAAAAACAACACAGTGGAAGAGCACAGGATCATTGAGGCAGTATGCATTGGCTGGTTCACTGCCGAATGCATAGTGCGCTTCATTGTCTCAAGAGACAAATGTGAGTTTGTGCGCCGCCCCCTTAACATTATTGACCTCCTGGCGATCACTCCTTACTACGTGTCTGTCGCGGTGACAGCGCTGACAGGAGAAAACCCTCAGCTACAGCGCGCGGGAGTCACCCTGCGTGTACTGCGAATGATGCGCATCTTTTGGCTAATCAAGTTGGCACGTCACTTCCTCGGGCTGCAGACGCTCGGGCTGACGCTGCGCAGGTGCTACCGCGAGATGGTCATGCTGCTGGTGTTCGTCTGCGTCGCCATGGCCATATTCAGCGCCCTCGCGCAGCTGTTAGAGCACGGCCTCGACCTGGAGACTAGCAATGAGGACTACGCCAGCATCCCGGCAGCCTGCTGGTGGGTTATTATCTCCATGACGACCGTCGGCTATGGAGACATGTACCCCATCACCATACCGGGACGCGTGCTGGGTGGCGTGTGCGTTGTGAGTGGCATTGTGCTTTTGGCTCTGCCCATTACCTTTATCTACCACAGCTTTGTGCAGTGCTACCACGAACTCAAATTCCGCTCAGCACGCTGCGTGCGAAGTCTCTCTTCTGAGTTTCTCAACTAGCTGTAGCATAGATCATCCTGGGAACCTGCTGGTCTTCAGCGTAGTAACACCACCCGCTCTTCTGTGCCTTTAAACTGAACCGAGCTCTGGAATATAGAGAAGGAACGTTCTACTTCAGATGGGAATGAAATCAGCATTTAGACTCTCTTTGCAAATCTATTACATCCAAATAATAACACAAGTACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129382 lncRNA downstream 42741 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 153532 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 154962 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 185083 10816561 ~ 10864596 (-) False G87376
TU129386 lncRNA upstream 16444 11071249 ~ 11071765 (-) True G87429
TU129411 lncRNA upstream 54091 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA upstream 69642 11124447 ~ 11126279 (-) True G87450
TU129359 lncRNA upstream 204212 11259017 ~ 11298534 (-) True G87409
TU129455 lncRNA upstream 216936 11271741 ~ 11273302 (-) True G87482
XM_043254163.1 mRNA downstream 3790 11044276 ~ 11045889 (-) False LOC122355648
XM_043253699.1 mRNA downstream 22249 11012472 ~ 11027430 (-) True rhoq
XM_043253701.1 mRNA downstream 42725 11005006 ~ 11006954 (-) True cript
XM_043253848.1 mRNA downstream 53772 10985042 ~ 10995907 (-) False socs5a
XM_043253869.1 mRNA upstream 27400 11082205 ~ 11084036 (-) True hcar1-4
XM_043254109.1 mRNA upstream 64613 11119418 ~ 11122838 (-) True zfp36l2
XM_043253246.1 mRNA upstream 162487 11217292 ~ 11219552 (-) True six2b
XM_043254472.1 mRNA upstream 269596 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 269596 11324401 ~ 11331786 (-) False sncgb
TU129388 other downstream 3797 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1560367 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1560367 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1560389 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 266618 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 778074 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 894466 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1594578 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1615820 12670625 ~ 12675472 (-) False prr15lb

Expression Profile