RNA id: XM_043254174.1


Basic Information

Item Value
RNA id XM_043254174.1
length 3483
RNA type mRNA
GC content 0.47
exon number 8
gene id znf438
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11753401 ~ 11797615 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTCGCCCAAAAATGGCTGTGGAGAAACAGTTATGAAGATGTGTCGATCTACTCACCTAATTAATGTGGCGCATGCTCCAAATTAACCGAGAGTCCTCTGATCGAGCCGGAGGACATTTCTGGAAGGTGAGAGGAGGGCTGTggaaggagaagaggaggaagaagaggattGTGGGCCATCTTTGGACAGCAAAACTGAAGATTCTTTTGACAATGTTTCCCAGATTCTCCAACTCATCAGAGAAACAGCTGCTATATCAGAGAAACCCTCTCTATGGCAGGGAAATGAGAGACAGCTCCTCCATCACATGACACGCGCTCTGAAGTCTGGATTTACAACTGGTGCCTTTGTTGAACACAATGATCTTCAGTGACACTGTGGCAGGCATGAAAACCCAAGAGCATCGTTCCAGCCCTCTGAAATCACATACACAAAGTGATGCACGACCCCACTCTCAAATGAAGGGTCTCCAGTTTCGCAGCATTGCCCCCAAAGCCCCAGCAGTGGTTCCATCCTCTGCTGTTCTATCCTGCCAACCTCCCCCAGCCCTTCCAGAAGCATCCACGGCTGTCAGCCCAAAATCCATACTTGTCCCTGCCCAAAACTATGCACTCATGCAGGTGGCCGGACAAGAGGGGACCTTCTCGTTGGTGGCCTTACCTCAGACACAACAGCAACAGCCAATCCAGAAGAACCTTAAGCTGCCTATTCCTAGATACCAACCAGTGCGAAGCAAGAGCGCTCCAGAAAAAGGCAGTAGCAAGATACCGAGTCCAGCCAAGGTTTCTGCAACCATACAAGCTCAATTACCTGCTGTGAAATCAGAACAGAATTCAGACTCAGAGCAGCTTGTTATGATCGATGCTCCAACTTCGTCTGAAATCAACCCCTTGCTCCCAGGTTCGCAGACAGATCGAAAAGTGGAACAAAAAAGCGATGCCGGTCCACTTAAAAATCAGCATGGAACCCCCCTTGTTGCCCCTGTCAAGAAAATCTCATCGGTTAAAACCCAAATTGAAGGTCAAGCCTCGGCTGGCAGTGCCATCACGGTCCTCTCACCCACTATCTTTAGCAAAGCTGTTCAGATCATTCCATCTCCACCCAAGGGCAAGCTGCCCATCCTGCCTTATGCCAAGGTGAAGAACTCCCTCCTGGCACCAACCAGCCTCGCCAGCACCCCGTTCTCAGACAAGCAGACTGGAGCCAAAAGCAGCCTGAAAAGCCCTCCAGACAAAATCAAGTCCACAGACAGCAAAGTTAAAAGCGAAAGCCTAATCCAAGACCACATCAACACCCAAATCAAGAAACCTCCAGGCAAGAAACGGGGgaggaagagaaaaacaatggaGGATATTCTAGCCTTCGAAGCTCGAAAGAAGAGATCCCTGTCGTTTTTCAGAAGGAGGGTACCTGAGAAACTTCCAACTGGTGCTTCGAATTCTGCCTCTCAAGAGAAGCTGCTTGATATATCCAAAAAGTATCGGAGTATTCGTCCCAAGCCGGTACTGGTCATGGAAACTACTATTCCACAACTTGTTCCGCTCCCTTCCTTGTCAGCATCAGAGAACCTTGATCAGGAGCTCGTATTAGGACAGCAGATATCAAGTGCTCCACAGTCTTCGCAAGCTACTGATCAGCAGTCTGTGTTAGAATGTAAAAGTGGTGGAGGAATGATTTACACAGGAAGTCGTCCACTGCATCGATGTCCTACCTGCAACAGGTGTTTCCAGTTCAAGCATCACTTGCAGAGCCACATGAACAGCCACACTAACCTGCGGCCTTACGTCTGCCCGGTATGCAGGAAGGCCTACGCTCACTCAGGCAGTCTTAGCACACATATGAAGCTGCACCATGCTGAAAGCAGGCCCCGGAAGAGCCTTTGCTGTGAATTCTGTGAGAAGTCATTTGGCTATGTGGGTGTCTACTTCAGCCACTTGAGAGAGGTGCACCGGGTAATACTTACTGTTGAACCGTCCATCAGTCAACATGAAGAAAACATGTCTGTAGGAGAGTCTTCAGAAGCTGATGAACAACGTGTTGACCCGGTCGAGCTACAAATTAAGTGTGGGCGCTGCCAGGCCATCACCCCTACCTTTGCTGACATGAAGCTGCATTTGTTGTATGTGCACGGAGAAGAGGTCCAGGTGCGGTTGAGGGACGGGGCCATGCGCGGGGGCCGTGAAGCAGAGGATGAACTGGTCAAACATGCAGCACATTACTGGAGGCAGCTTAATGAGAAACGCAACCTAGTTCACTGCGGCACCTGCGACGAGGAGTTCTTCTCCTTTTCCAAGTTCAAACGCCACCTCCATTCTCACCATCAAGAAGCCAGAGTGAGTCAAGAAGAGGAGGACGAAGAGGAGATAATAGGCTTTCCACCTGCTGTTTACTTGGACAATGGCAAGAGACATCGCATATCAATATTTCTGACTCAACAGAGCACAGACAGCCAAAAGCTCAAGCTTGCTATAGCTTACACCCTTAACACAGCTTTTAAAGGGCCAATTAGGGGAAGTTAAACCGTTTGCCAGAACAGTGTGGCAATACACTGTATAAAAGACTGAGGGAATAAAACTTTCAGGATATGACCTATTGTTCTGAGATAATGTGCGATGTAATGTTCTCCAGCTCTCTTGGACAGAGCACGGTCAACGAAAAAGCCCCATCGCCGCAGGCTACAAGGAGCGCCAAGAAACCGCACCTGCCAAAGACAGACTCCATCACGAGAGCCATATCAGGTTTTACtgcaggggtgtgtgtgtgtgtgtgtgtgtgtgtatgcctcTGAGGAAACAAAGCCTTTTAAACACCTTTTCGTCTACACATCATCCAAAGGTACAAGCGCAACCTCCTAGCAATGCCTTTAACTCTGGGAAAACATTACACGCAACATTCGGCTTCAGGACTGTGaagacaaaaggaaaaaaaaatgaaagtataaAGACTAGCAGAAAGAAGTATAGAGGAAGAAATGTCGGTCATGTAAGTTTGGAGAGCTATGGGGAAAAGATTTCTGTGAACTAAAAAACACATAGCATATCCATAAGCAGCAAGCCACCCACTAGCTCTTGCTAGCCCATTATAGGCCTGGcctagcattaaaaaaaaaaatgcagccctCTATTCGGAAAGTCCAAGatataaattgaaaaaacaaaagtccACTGCTGTTCTTATGCACTTTTATGATAGCATGATAGAATTGTGTCTGCATAATTTTCGCAACACATCTGTTATTGCACAAATCATCTTTTGGACCCACTAACTAACTCCCTAATAGAACTAAAAGgatttacacacatatatatatatatatatatatatataacaaaataataacaaatccgtttctatttttttcaaagtatcATCAGATTTGCTCAAGCACGAGAAGTGTTCCTGTTGCTATAGTTAATTCTGTCGTGAAACTTAGATTTGAAGAAAGCTTTATCACACCCCTCAACTGGCACCGTGGAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129252 lncRNA upstream 8996 11741981 ~ 11744405 (+) True G87331
TU129184 lncRNA upstream 212297 11473846 ~ 11541104 (+) True G87282
TU129185 lncRNA upstream 212297 11473846 ~ 11541104 (+) False G87282
TU129170 lncRNA upstream 237405 11438405 ~ 11515996 (+) True G87272
TU129189 lncRNA upstream 256409 11484193 ~ 11496992 (+) True G87285
TU129270 lncRNA downstream 2741 11800356 ~ 11800627 (+) True G87341
TU129272 lncRNA downstream 5672 11803287 ~ 11803627 (+) True G87343
TU129264 lncRNA downstream 24448 11822063 ~ 11823322 (+) True G87337
TU129284 lncRNA downstream 85070 11882685 ~ 11883417 (+) False hoxb6b
TU129657 lncRNA downstream 199675 11997290 ~ 11997512 (+) True G87617
XM_043253852.1 mRNA upstream 75921 11634881 ~ 11677480 (+) True arhgap12b
XM_043253854.1 mRNA upstream 75921 11634881 ~ 11677480 (+) False arhgap12b
XM_043253851.1 mRNA upstream 75921 11634882 ~ 11677480 (+) False arhgap12b
XM_043253856.1 mRNA upstream 75921 11634883 ~ 11677480 (+) False arhgap12b
XM_043253855.1 mRNA upstream 75921 11634883 ~ 11677480 (+) False arhgap12b
XM_043253492.1 mRNA downstream 17050 11814665 ~ 11820426 (+) True msl1b
XM_043253486.1 mRNA downstream 26224 11823839 ~ 11835131 (+) True fbrs
XM_043253487.1 mRNA downstream 26224 11823839 ~ 11835131 (+) False fbrs
XM_043253488.1 mRNA downstream 26224 11823839 ~ 11835131 (+) False fbrs
XM_043253482.1 mRNA downstream 37658 11835273 ~ 11861572 (+) True LOC122355327
TU129235 other upstream 51746 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 669031 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 1171646 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 1173405 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 1262229 10487620 ~ 10491172 (+) False LOC122355192
XR_006252241.1 other downstream 139227 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 935149 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 962759 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 1644328 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 1798179 13595794 ~ 13596348 (+) True G88082

Expression Profile