RNA id: XM_043254182.1


Basic Information

Item Value
RNA id XM_043254182.1
length 1764
RNA type mRNA
GC content 0.41
exon number 3
gene id foxl3
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8049576 ~ 8052386 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gacaaaacaaaacatccaaTCCCGAGTAGGACCGGACCACCCAGGAATCAaagagtgaatgagtgagtaGAGTTTGTTGATCACGCCCCGGGTTCAGACGTTTACAGTAGTTCCAGTCATGTACGCCCATTATATGAGCATCTGAGCAGCAGCCGGTCACTtcccctacacacacacacacacacacacacacacacacactcacaaacacttcTCATGAGAGCTGCATCATTTGTCTTGGCCAGCTAGAGCCTTTCTCGTTACTACAAACCATAAAGGCTTGCCACCCTGGACGCGTGATGATGTTTGACAGCTCGCAATATCCTTATAACTGTTTTAACTATGATGGAGAAGGATACCCCTCATGTGGCACTGATGAAGAGAAGAAAGTGTGTCGACCAGCTTACAgTTACATTGCACTAATAGCAATGGCCATACAGCAGAGCCCAGAGAACAAAGTTACCCTATCAGGAATCTACGAGTTCATCATGAAGAGATTTCCTTATTACAGATCCAACCAGAGGGCTTGGCAAAACTCAATTCGTCATAACCTCTCTCTAAACAGCTGCTTTATAAAGGTGCCCCGTACAGAAGGTAACGAGAAAGGAAAAGGTAATTACTGGACATTCGCCACGGGCTGCGAGTCCATGCTGGACCTCTTTGAAAACGGCAACTTTCGTCGCCGCCGCCGCAGACGCAACTTAAAAATGGGCCTGAAGGAGCCAGCCGAACCCTTTGTTGCCATGGACACTCATCAGGGCATTGCAGTAAGACCCACGGATTCAGATTCTTTCTGTCCTGTGAACGCTAGTCGCGGACCGGCTCAAAACAACCCGCCTCTCAGCAAACCCGAGCCCGAGATCAAATTCAGCATTGACTACATTCTCTCCACGCCGGACCCTCTGCCCGGGTTCAGAGCCCCTAACGGTGCAGCTGGAGCTGTGATCCACCATCTGGAGCCACAACATCTCAATCTACACTTCTGGACCATGTAACCAAAACGCAGATCAGTAAATACCCTGATGTTAAAACAGTCAGTGCTCAGTCTTTCCCATAATGCAAATCGGCTTGTCAGTAGGCACATGCAGTTTGTTGCGTGCTAGTGCTCCCGTCAGTAAGTCTGCTGTCGCTCATGTTAGCAaagctaaaaatatacataGTGACTTAGAAGTATAATACtatttaatgataatgataataatttgaggagatatatatatatacacataataatgcTCTCTTTGTAAAGGtacaatgcacattttttaatataaaacctaaaatgtgtttttatgtcacTATTAATGAGGACAGTATGATGAACATCTGTCTTTAAATttccactttagcacaatcaagTACACTTCAGTATATCTTTAGTTGGATTCAGCACTACTTCCTGCTCAGTgaaagtgcattaagtacaaaacGAATTGTTCCATGCAGACTTTAAGTGTACCAGTACACCAAACGTAAAAATCGCAGGGTATTATTATTaagcacataaatatgtaaatgtatttgtagtatacttagtatgacataaatgtatttcaaatacattttagtgtatttattttccacTAGGGTAGACAGTTGATTTTGATGAAAatcaatcatattttttaatgtcaaacataCTGTAGGCAATACTTTAGAATAAGTctccattagttaacattaaataataacaaataatttattcttaaataatgttaaacGTATTAAtgaaattagtgctgtcaaaaaatgaatctcatctaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127808 lncRNA upstream 202714 7846558 ~ 7846862 (+) True G86374
TU127671 lncRNA upstream 205493 7825272 ~ 7844083 (+) True LOC122355675
XR_006252237.1 lncRNA upstream 205793 7833102 ~ 7843783 (+) False LOC122355675
TU127670 lncRNA upstream 215431 7825272 ~ 7834145 (+) False LOC122355675
TU127673 lncRNA upstream 325715 7720392 ~ 7723861 (+) True G86268
TU127924 lncRNA downstream 4545 8056931 ~ 8060176 (+) True G86460
TU127947 lncRNA downstream 52762 8105148 ~ 8106773 (+) True msrb1b
TU128039 lncRNA downstream 143599 8195985 ~ 8196196 (+) False hbbe2
TU128041 lncRNA downstream 145708 8198094 ~ 8198410 (+) True G86540
TU128037 lncRNA downstream 151197 8203583 ~ 8204143 (+) True G86536
XM_043254223.1 mRNA upstream 3537 8009380 ~ 8046039 (+) True fam20cb
XM_043253559.1 mRNA upstream 78022 7902114 ~ 7971554 (+) False LOC122355373
XM_043253562.1 mRNA upstream 78022 7902114 ~ 7971554 (+) False LOC122355373
XM_043253561.1 mRNA upstream 78022 7902114 ~ 7971554 (+) False LOC122355373
XM_043253560.1 mRNA upstream 78022 7902228 ~ 7971554 (+) True LOC122355373
XM_043253174.1 mRNA downstream 30248 8082634 ~ 8085604 (+) True noxo1b
XM_043253175.1 mRNA downstream 30314 8082700 ~ 8085604 (+) False noxo1b
XM_043254352.1 mRNA downstream 33705 8086091 ~ 8089327 (+) True rnf151
XM_043254416.1 mRNA downstream 50313 8102699 ~ 8105036 (+) True neurl2
XM_043254418.1 mRNA downstream 50313 8102699 ~ 8105036 (+) False neurl2
TU127672 other upstream 205493 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 741347 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 744728 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 1527005 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1608050 6440821 ~ 6441526 (+) True G86019
unassigned_transcript_1921 other downstream 652874 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 784062 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 1704887 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 1819278 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 2429229 10481615 ~ 10487341 (+) False LOC122355192

Expression Profile