RNA id: XM_043254188.1


Basic Information

Item Value
RNA id XM_043254188.1
length 2635
RNA type mRNA
GC content 0.40
exon number 7
gene id casp7
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13436907 ~ 13444732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGGCTGGAGGAAATGGAAGACAAGGAGTTGGGCAGTAGTTTCGTTTTCTCCGTCTAGTAACCTTAAACTTGAAAGAGCAACGAACAAAACAGAAGCTGAtccgacaaaaaaaaaaaaaAATGGATGCAGAAACCTTCACCACTGAGAGTAAAGAAACAATGGAGGACCAAGACTGTGGAGAAGGAGACACAGTAGATGCAAAACCTGACCGCAAAGGGAGATTTGTGCTTTTTGGAAGTAAGAAGAAGGATGGCAAACTGCAGGAAAAAGAGCAATCTTCTGAAAGCCATTACAGGATTGTTTCACCAACATTCCAGTATAAGATGAGCCACCGGCGTGTCGGCAAGTGcatcatcatcaacaacaaaaattttGATGAAAAGACAGGGATGAATGTACGCAATGGCACAGATCGTGATGCTGGAGAGTTGTTCAAGTGCTTTAAAAACTTGGGCTTTGAAGTTTTCATCTACAACGACCAGACCTGCAGGAATATGGAGCGGCTACTTAAAGAAGTCTCAGAAGAGGACCACAGTGACAGCTCCTGCTTCGCCTGCATCTTGCTGAGCCATGGCGAGGAGGGCATGATTTACGGCACGGATGGAGCAATGCCCATCAAGAGTATGACCTCGCTCTTCAAAGGAGACATGTGCAAGAGCCTCGTGGGCAAGCCCAAGCTCTTTTTCATCCAGGCTTGTCGGGGTTCAGAGTTTGATGATGGTGTACAAACAGACTCAGGACCGCCCAATGACACGATAGAGACAGATGCCAATCCAAGACACAAGATTCCGGTAGAGGCAGACTTCCTGTTTGCTTATTCAACTGTGCCAGGTTACTACTCCTGGAGGAATCCGGGCCGAGGCTCCTGGTTTGTTCAGGCCCTCTGCAACGTTCTTAATGAGTTTGGCAAGCAACTTGAAATCATGCAGATCCTCACTCGGGTCAACTACATGGTGGCCACCAACTTCGAATCCTGGTCAGAGGACCCCCGTTTTAGCGAGAAGAAACAGATACCTTGTGTGGTGTCCATGTTGACTAAAGAGCTCTACTTCAACTGATCTGAGCAGACCATCTTCACATGCTGTGCTCCGTCTGCCCTTTCACAGCATGCGCATTTTCTGGCCAAGGACTTTATAGTAGCACACTTTTAATTTGTTATCTtttaacagtaaatataaaCCAAATTGTTAACCTTTTTTGTCATTGATCCGCCATAAGGAGGGAAACCTCAGTCCAATACTtgagcaaaatatttttacataaatgtaagaAGCATTTTTAAGAGGTGCACATTTCAGGATGGCAGGCAGGAAAGACACATCAGGTGTACAAAGACTGACCACTGACTGACCTCGACACGACTGACTTTACTCGACCAAGCGGTCACAACATTCAGGGATGATCCCAGCTGGAAGTCTGTGTGTGaacgcaatttttttttacgttatgCTGGGCATATAGACACCGAAATGGTATTTCTTTTTGCTACTTCCTGTTCAAATCCACTACTTTTTCAGTGAATGTTCTACTTCAACTTTCTCAGAGTATTCCAGGGAATAGTAATGTCAAATATTATCTGATCTTTGTCCACTGGCGGTGTCAAATATCCATGTTGCTTTGCCAACTGTGAAAGATTTTCTGCCACTTTTACTAGATATAAATTTTTACTAGATTTTTTACTAGATTTTTGATcctaaaaatttgtaaaaataatatataataaaaataaataataaaataggagCTTGGAAAAGACATCCAACACCACACAAAACCTTTGCTGTTCTGTTTTTACAGAACAGGCAACTCGAACATAAATTCAAAGCATATAAATGGCCATTTGTAGCATTTTAGTTTGGTTTGGTTATTCCAGAATGCTCTTCAGAGGAGGTCAAAGAAAGGGCATGAATAGAAATGGAGTGGCATATAGTGAAGTAATGCTGACACCTGCaaggttttgaaagcttttcGTTCATGCCTCACTGGTTAGTTTGTGTtcactgaaaaactgaaattagATCAGCATTCATTCTGTGTATTTTGAGCACACTGTAGCTTCATGCAGTATTTACTGATGGTTTGTACCGAATCCGTCTATAATCTACAGAGGCAGCTATTGTTTTACTGGTGACCATTTTACCCATTTACCACCCATCTGACCAAATGTGCCGTTTCAAACTTGATGGAAGGTTCTGAAGTTTTCAGAGCTTGTTGTCTTTGGTTATGTCCAacagtttttaatttactttttggttctttctgtatttttcattcTCATTGTTCATCCGGATCACACACTGAATCTGCCAGCCTGTGCACCATCTGACCACCACAAATTAAAGGCCCTCTTTTCTTTATGCATAGATTATTAGTGAAGTGCTCCAACTATACTGTTTTGAAATGGaagacaatttttattttttattttatagtacactgtttttacatttaaatgctttacaGTGATAATAGGAatgttaattactttttttttgcacaaatgccctgaaaaaattgtttacattgtCAACATCACATTGTATAAAGTGGGGctgatttttgtttaaattactttaattcaaatgaatgcatttgtaagccttattttattgtattaaaagaCTTTATTgaaa

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130263 lncRNA downstream 2782 13433894 ~ 13434125 (-) True G88019
TU130253 lncRNA downstream 4712 13429406 ~ 13432195 (-) False LOC122355808
TU130240 lncRNA downstream 68587 13365953 ~ 13368320 (-) True G88003
TU130017 lncRNA downstream 629261 12804696 ~ 12807646 (-) True G87860
XR_006252231.1 lncRNA downstream 798171 12613150 ~ 12638736 (-) True LOC122355629
TU130280 lncRNA upstream 13729 13458456 ~ 13459865 (-) True G88034
TU130281 lncRNA upstream 15418 13460145 ~ 13461245 (-) True G88035
TU130329 lncRNA upstream 93964 13538691 ~ 13539383 (-) False entpd1
XR_006252233.1 lncRNA upstream 264328 13709055 ~ 13712541 (-) True LOC122355666
TU130373 lncRNA upstream 265339 13710066 ~ 13710267 (-) False LOC122355666
XM_043254359.1 mRNA downstream 4845 13424308 ~ 13432062 (-) True LOC122355808
XM_043253053.1 mRNA downstream 13949 13418717 ~ 13422958 (-) True LOC122355076
XM_043253054.1 mRNA downstream 14283 13418717 ~ 13422624 (-) False LOC122355076
XM_043254220.1 mRNA downstream 18692 13414181 ~ 13418215 (-) True LOC122355682
XM_043253502.1 mRNA upstream 78941 13523668 ~ 13540301 (-) True entpd1
XM_043253501.1 mRNA upstream 78941 13523668 ~ 13529991 (-) False entpd1
XM_043254360.1 mRNA upstream 108829 13553556 ~ 13555025 (-) True crygmx
XM_043254237.1 mRNA upstream 110966 13555693 ~ 13557090 (-) True crygmxl2
XM_043253770.1 mRNA upstream 164693 13609420 ~ 13691337 (-) False tcf7l2
TU130001 other downstream 684229 12751904 ~ 12752678 (-) True G87845
TU129915 other downstream 761435 12649383 ~ 12675472 (-) False prr15lb
TU129914 other downstream 761435 12670625 ~ 12675472 (-) False prr15lb
TU129639 other downstream 1485752 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 1601295 11832879 ~ 11835612 (-) True G87569
XR_006252221.1 other upstream 167007 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 167007 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other upstream 167009 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other upstream 169420 13614147 ~ 13691338 (-) False tcf7l2
XR_006252179.1 other upstream 528155 13972882 ~ 13976511 (-) False srsf2a

Expression Profile