RNA id: XM_043254199.1


Basic Information

Item Value
RNA id XM_043254199.1
length 1899
RNA type mRNA
GC content 0.44
exon number 10
gene id irf9
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5405555 ~ 5412438 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCCCCTCCAGATGTAACGgccatttattttttgaacagCTTCGGTCGCTCCACTTGCTTTGCTTTCAGAGGTTTCTTGCGGACGGGCATGTCTGTGAGCTCTAGAACGGCTGACTGTATACTGGACCGAAACTAAGATGGCATCTGGAAGGATTCGTTCCACTCGTCGCCTGCGGTCCTGGATAGTggaacagGTGAACAGTGGGAAGTATCAAGGCCTAGTGTGGGACAACCCTGAGAAGACTATGTTCCGTATCCCTTGGAAACATGCAGGAAAACAAGATTTCCGAACAGAGGAGGATGCAGCTATTTTCAAGgcTTGGGCAGAGTTTAAAGGGAAGCTTATGGAGAATGGAAATTCAGACCCTGCATCCTGGAAAACTCGCCTTCGCTGCGCCCtcaacaaaagtccagagttTTGTGAGGTCACTGAAAGGTCACAGCTGGATATCTCAGAACCCTACAAGGTGTACCGCCTCGTACCACTAGAAGAACAAGGAGTagagaaagtgaaaaaagaGAATGTACAGAAGCCAGTGAGGAGCAGCAGAAGGAAACGCGGCGAATCTGAACGAGATGAAGAGCGgattgcatgcaaaaaaataattaaagaggAGGTTACTATGCCCCAGTCCATCAACATGAGTGCACAGGAAATCATCCTACAAACGGGAAGAGAGATCACACTCCAAGCAGAGGTGGAGACAAACCCTTTGAAGACTGACAACAACACTGAAGATATCCAGGTAAACTTCACCATTGAAGCTGTCGAGAAGAGAGCTCTGCATTCTTTCCACATAACCGTGCACTACATTGGTCAGGAGGTTCTGCGGCGAGAAATAATGGGGAACGATGTTCGGATTGCTTACCTGCCTCCCTCGCCCGTCCCTCCGTCTCCACCGTCTCTAAACAGCACTGGCTTCCATCGAATCCCTCTCCCAGAGCCCCCATCAGACATGAGCTCAGACCCCAACGTCGCTCCACGTTTGAGCGCTCTTAACAAATTGCTGCCCTTCATGGAGAGTGGAATAGTCCTGACCTCAACAGGAGGAGGCATCTATGCCATGCGCTTCTGTCGGGGACGGGTCTTCTGGAGAGGACCACATAACACCACCACAGGACCCTGTAAAATGGAAAGAGCAAGTGAGCCTACACAGCTCTTTAGCAAGGATATATTTAAACAGGAGTTGGACGCTTTCCGCAGTGGAGGAAAACAACCTCAAAGTGAGATCACTCTGTGTTTTGGAGAAGAGCTGTCTGATGAAGATAACATTGATGATAAACACATCATCATTAAGaTCTCTATCCCATGGGTTGAGTCGCAGATAAAAGAGGCCATGGCCATCAGAGAGTCTATTGAAATTCTCAGAAGTCTGGCCAGCCAGTCTCCTACAGGGGAAGTGACACTAAACATCGAATTATTGCAGTAGTAACAAACCTCTAAGATAATACTGCATATTGACAATAAGGgccaaaatggagaaaaaaaaaaactctatatATGGCATGAGATGAGACAGCTTGTATAAACACTTTCTTGTAGGTAgttgaaataaatattgcaattattagttgcttcaaatgtttaaaatatttagtcatGTTGTAGCTAAATCCACATATTTATAAgtgatataaaatgtttttagtcaATATAGCTTTGTTGGTTTCACAGCAAAATGTGTAAGAGCACAACATATTTTGTCATTGTTACCACTATGCATATATTGCTGTAGTAGAGTCTGAGTAACGatgtttgaaataattaaatgcattaataacaaTGTACACGGTTAACTACAGGTGGATTGCTAAAATACCCTGCACGTTTTCATCCAACGCTAATGTTTCACTGATcttatcatttgttttataagtaataaatgTCTCAGTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126873 lncRNA upstream 2843 5397563 ~ 5402712 (+) True G85661
XR_006252214.1 lncRNA upstream 247823 5154654 ~ 5157732 (+) True LOC122355395
XR_006252213.1 lncRNA upstream 261177 5142900 ~ 5144378 (+) True LOC122355394
XR_006252212.1 lncRNA upstream 261177 5142900 ~ 5144378 (+) False LOC122355394
TU126782 lncRNA upstream 307851 5085661 ~ 5097704 (+) False LOC122355392
TU126891 lncRNA downstream 32969 5445407 ~ 5446719 (+) False drosha
TU126902 lncRNA downstream 71136 5483574 ~ 5485749 (+) True G85683
TU126904 lncRNA downstream 79276 5491714 ~ 5492934 (+) True G85685
TU126906 lncRNA downstream 82669 5495107 ~ 5496234 (+) True G85687
TU126935 lncRNA downstream 189036 5601474 ~ 5602181 (+) True G85713
XM_043253693.1 mRNA upstream 9043 5382602 ~ 5396512 (+) True atp2a1l
XM_043253692.1 mRNA upstream 9043 5382602 ~ 5396512 (+) False atp2a1l
XM_043253687.1 mRNA upstream 32570 5367524 ~ 5372985 (+) True ppp1cab
XM_043254383.1 mRNA upstream 45701 5356354 ~ 5359854 (+) True paqr4b
XM_043254342.1 mRNA upstream 50013 5341103 ~ 5355542 (+) True cmn
XM_043254307.1 mRNA downstream 8268 5420706 ~ 5423417 (+) True psme2
XM_043254292.1 mRNA downstream 14143 5426581 ~ 5446687 (+) True drosha
XM_043254437.1 mRNA downstream 40391 5452829 ~ 5476664 (+) True kcnh4b
XM_043254357.1 mRNA downstream 98260 5510698 ~ 5532907 (+) True oplah
XM_043253874.1 mRNA downstream 131317 5543755 ~ 5564754 (+) True ppp1r16a
TU126784 other upstream 315917 5088925 ~ 5089638 (+) True G85587
TU126761 other upstream 952280 4452855 ~ 4453275 (+) True G85567
TU126759 other upstream 986342 4418247 ~ 4419213 (+) True LOC122355720
TU126747 other upstream 1001875 4401131 ~ 4403680 (+) False LOC122355090
TU126733 other upstream 1128170 4275344 ~ 4277385 (+) True ndufa4b
XR_006252205.1 other downstream 474514 5886952 ~ 5953312 (+) False becn1
XR_006252206.1 other downstream 474514 5886952 ~ 5943580 (+) False becn1
TU127259 other downstream 683510 6095948 ~ 6096732 (+) True G85962
TU127298 other downstream 802481 6214919 ~ 6216567 (+) True G85986
TU127334 other downstream 1028383 6440821 ~ 6441526 (+) True G86019

Expression Profile