RNA id: XM_043254200.1


Basic Information

Item Value
RNA id XM_043254200.1
length 888
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122355671
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7838092 ~ 7839471 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acatttattataaatgataaggTTTGTGTTTTTCGTTTCATCCAATAGTTTTGTGACGCGCTTTGCGATCAAGTAACGATTACAATGGGATGTACTTGTGTGTCCAGGACGGGTCAGGTGGTGTAACGGACACAGCTGCAGCTGACATACAAACGCTGGTGGTTTTTGACATCACGTAGCGATGGTCAGACCTGTTATAATCAGCGAAGGTACTGCTGCAAGTAGAGGCCTCGGATTTTCCTCCGATCCGTTGAGAAATGGCTATCACAGATGTTTTGGCTGCCTCTGATATCTCAACTGccataaatgcatgtaaaggTAAAGTATGAATGACGACCCCGGTGAAcgttgtgtgtttttcttttattcttttgtcAGAATGTTCATtgtgaatgtttctttttttaatttgactcTTGCAGCAAAGGATTCTTTCAGCCCAAAGACATTTTTCGCGACAGTAGGCTTGTCAAAGAAGTCTCCTCCTGAGATAGAGAAGGTCTTTAAAATGTTGGACCAGGATAAGAGTGGGTTCATTGAACAGGATGAGCTACAGCTGTTTCTGCAGAACTTCTCTAAGGGGGCTCGTGCGCtaacagcagctgaaaccaAGGCCTTCCTCACGGCTGGAGACATTGATGGAGATGGGAAGATCGGCTGGGAAGAATTTTCAGCCCTCGTTAATGCTTCCTGAAACCAGCCGTGACTGTTGAACATggcaaagaaaaatgtgaaaaacgaGCTTTGCCACTGGGGTCTTGTCAGTAGTTTTCAAAGCTGGATTGTTCAGGATTGTGCTTTGCCTTCTGTGCTTTGCTGTAATGTTATTGTATTAGCTTAGAAATTATACCCGAGGAtggaatacaaaataaaatgttttcaacaata

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127784 lncRNA downstream 129898 7707860 ~ 7708194 (-) True G86357
TU127783 lncRNA downstream 132609 7705221 ~ 7705483 (-) True G86356
TU127781 lncRNA downstream 139078 7698665 ~ 7699014 (-) True G86354
TU127756 lncRNA downstream 201948 7634638 ~ 7636144 (-) True G86333
TU127757 lncRNA downstream 203536 7631396 ~ 7634556 (-) True G86334
TU127809 lncRNA upstream 7010 7846481 ~ 7846832 (-) True G86375
TU127862 lncRNA upstream 48495 7887966 ~ 7888246 (-) True G86412
TU127863 lncRNA upstream 50832 7890303 ~ 7891221 (-) True G86413
TU127922 lncRNA upstream 215297 8054768 ~ 8055031 (-) True G86458
TU128016 lncRNA upstream 271722 8111193 ~ 8112713 (-) True G86516
XM_043254203.1 mRNA downstream 953 7835431 ~ 7837139 (-) True LOC122355674
XM_043254202.1 mRNA downstream 4940 7831396 ~ 7833152 (-) True pvalb3
XM_043254150.1 mRNA downstream 9107 7826602 ~ 7828985 (-) True pvalb9
XM_043254481.1 mRNA downstream 13789 7816015 ~ 7824303 (-) True ccz1
XM_043253018.1 mRNA downstream 22753 7807662 ~ 7815339 (-) True dlgap5
XM_043254095.1 mRNA upstream 14148 7853619 ~ 7868360 (-) True tecpr1a
XM_043254094.1 mRNA upstream 14148 7853619 ~ 7868329 (-) False tecpr1a
XM_043254096.1 mRNA upstream 17702 7857173 ~ 7868329 (-) False tecpr1a
XM_043254381.1 mRNA upstream 29523 7868994 ~ 7885973 (-) False baiap2l1a
XM_043254380.1 mRNA upstream 29523 7868994 ~ 7885972 (-) False baiap2l1a
TU127575 other downstream 449182 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 733874 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1166845 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1764660 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1783739 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 508691 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 678764 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 679509 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 771081 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 843581 8683052 ~ 8687548 (-) False plbd1b

Expression Profile