RNA id: XM_043254202.1



Basic Information


Item Value
RNA id XM_043254202.1
length 723
RNA type mRNA
GC content 0.47
exon number 5
gene id pvalb3
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7831396 ~ 7833152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCGTCATGCGGTATCCATTACATTATGCCTTATATTTCGGTTGAGTAGTGGTATATAAGGTGGAAGCCACGGAGTTGGTGCTCACTGCAGTAGCCAGTTTCATCCCTGCGAATCCAAACCCAAACCCTAAGGACAACCAGAGGCTAACCATGGCATTCGCTGGTATTCTGAATGAGGCTGACATCACTGCAGCCCTGCAGGCCTGCCAAGCTGCTGACTCCTTCGACTACAAGACCTTCTTCGCCAAGGTCGGTCTGTCTGCCAAGACTCCTGATGACATCAAGAAGGCCTTTGCTGTCATTGACCAGGACAAGAGCGGCTTCATTGAGGAGGATGAGCTTAAGCTGTTCCTGCAGAACTTCTCTGCTGGCGCCAGGGCACTCACTGATGCAGAGACAAAGACCTTCCTGAAAGCTGGAGACTCTGATGGTGATGGCAAGATTGGAGTTGATGAGTTCGCTGCCTTGGTCAAAGCATAAATGGCACCTGACCAACAACTTTTGCTGACAATCAGTATTGTAGCCTGAGATCTCCACTTTTTTATCGGGGTGGCTGATTTTTATACTAACTGAATTCGAACTGTCCGCTCCCATGCTGCACCCGGTCCACAATGACTGTCAACGTCACAAGGTCTTTTGCGTTGTAGATATACATGTTGGTTTCTGTAAAATCTTTGATGCTGTTTTTGGGAAAGGacaatgagaaaataaacactatttttca

Function


GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU127784 lncRNA downstream 123202 7707860 ~ 7708194 (-) True G86357
TU127783 lncRNA downstream 125913 7705221 ~ 7705483 (-) True G86356
TU127781 lncRNA downstream 132382 7698665 ~ 7699014 (-) True G86354
TU127756 lncRNA downstream 195252 7634638 ~ 7636144 (-) True G86333
TU127757 lncRNA downstream 196840 7631396 ~ 7634556 (-) True G86334
TU127809 lncRNA upstream 13329 7846481 ~ 7846832 (-) True G86375
TU127862 lncRNA upstream 54814 7887966 ~ 7888246 (-) True G86412
TU127863 lncRNA upstream 57151 7890303 ~ 7891221 (-) True G86413
TU127922 lncRNA upstream 221616 8054768 ~ 8055031 (-) True G86458
TU128016 lncRNA upstream 278041 8111193 ~ 8112713 (-) True G86516
XM_043254150.1 mRNA downstream 2411 7826602 ~ 7828985 (-) True pvalb9
XM_043254481.1 mRNA downstream 7093 7816015 ~ 7824303 (-) True ccz1
XM_043253019.1 mRNA downstream 16057 7807662 ~ 7815339 (-) False dlgap5
XM_043253018.1 mRNA downstream 16057 7807662 ~ 7815339 (-) True dlgap5
XM_043254282.1 mRNA downstream 35630 7789587 ~ 7795766 (-) True eif2ak1
XM_043254203.1 mRNA upstream 2279 7835431 ~ 7837139 (-) True LOC122355674
XM_043254201.1 mRNA upstream 4940 7838092 ~ 7839471 (-) False LOC122355671
XM_043254200.1 mRNA upstream 4940 7838092 ~ 7839471 (-) True LOC122355671
XM_043254095.1 mRNA upstream 20467 7853619 ~ 7868360 (-) True tecpr1a
XM_043254094.1 mRNA upstream 20467 7853619 ~ 7868329 (-) False tecpr1a
TU127575 other downstream 442486 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 727178 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1160149 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1757964 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1777043 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 515010 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 685083 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 685828 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 777400 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 849900 8683052 ~ 8687548 (-) False plbd1b

Expression Profile