RNA id: XM_043254207.1


Basic Information

Item Value
RNA id XM_043254207.1
length 1987
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC122355678
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12549656 ~ 12552715 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGAGAATATTGGTGTGAAAGTCAAACCAGCAACTTCCTTTTGCATGGCAGTAGTGTCCACCCATGATCTAGTGCAGTATATAAACTCTATTCTATATAGTTGACTTGCATAACGCATAGAGATCTGCTCTTTGTGAAAAGATGCTTTTCTTATGGGTTCAAGTGCTTACCGTGCTGGTTGTCTGCGCAGCTGACTCTGCGAACAGAGATATTTCATATATATTCAGAGCTTGGAATATTGCTGACCAGCCTTTGCAGGAGCAACTTGCTGTCATGTATAAGgAGATGGAAAGTTTGAAACACGAACAAGCAGTAATGAAACAAAAGCAAGAAGCCTTGAGCCAGGCATTACCACACTGTTCACAAAAGCCTATTGATACAGACGTGGAAATGAATTTGACATCACTACAAACAGGCAACAGTCATTTGCTGTATACCCTCACCCAGGATGGAGATGAAGATGAAGGCTCTGGTGTGGATGACAGTGACGAATCCTCTGACCCCTGCAATCATTATACCGCGCTGGACCAAGCCTGGAGAGCCACAAACTACACCACCAAGAATGTTGCTTGTGACCGTCGTGTCCAGTGGAAGGGCTGGTACCGCCTCTTCTACCGTGGGAAACCCATCCAGATGCCCGAGAAGTGCGTGAAGAAAGAAATGTGTGGCACTCACGCTCCGCTCTGGCTCGCCGGCCGTCATCCCCGGATACGAGACGGGGTGGTCACCCGCAAAGTGTGTGGAAACTGGAAAAACAACTGCTGTTTGTTCAAATCTTCTCCCATTCAAGTGAAAGCGTGTAGGGGAAACTACTACGTCTACAAGTTTGTCAAACCCGTAGCTTGCCATATGGCATATTGTACAGATATTAACACGCTTGTCTGTGGAACGTGCAAAAAATCGGAGTCTTGCATCAGCAGAGACAAAATCACCTGGATGTGTAAGAAAAACAAGAGAAGAGTGAAAGCAAAAGTCCATTTTTTTGTCACCTACCCGGCCAGCATCTCAGGAAAAGTGAACAGGATTATGTACAGGAAAGTGTATGTGAATCAAGGAAGGGCTTTCAGCACTCGCACCGGGATATTCAGAGCTCCGGTTTCTGGCGTTTATCAGTTCTTCTTCTCCACACAGACTGGGGGCAGTGGGGCAACTGATCTATGGCTGGTTGTGAATAATTACTGGGTGGCTGTGTCCCATAGCAATATTCAGGGCTCCAGCTCGGTTGGGAGTCTGTCTACGTACATGACGACTCTGCGCAAGGGCGCTACGGTTTATGTGACCCATAACCGTGGCCGCTCTTGGGCCAATAATTCGTCCAATACCATCGTTTTTGGGGGTTCATTGCTTATGGTGAGAAAAATCTAAGAGAATGTAAAAGTCATCTGAGGCAAAATTCAGTTAGAGGCCAATTTAATAGTACTAACTAATCGGATTGACTTGCATAAAACATACAATGGTAAAAAATGTTCTGCTAGTTCTGTTTATTCTCTCTGTTTATTcataactatttttaaatgtttcttcctgaaagatttatttcaaatgcaagTACCCGTAACATTTTTCTAAGTgcttttttctataaaaattaCTTTGACATAAAAATTTTAGACTAACCAACcttttgtctttattatgtatatgtatacacattttactaataacaataataatagtataaaagaaaacaatatttgtttcctttcttttatcTATAAAATTGccataaatcattttgttttgtatatatgtaaaatttgtaattatataaacatttttagtatatatatatatatggtaaacTATggtaattatgtattatgtaacgTTTAGGAATAATATTGTCCCAATCTCCTAGAGACACATGTGGGGGCAGTAGAGTCATCCCATTGTGTTTAATCAGGAAGGATGTCTCTTCTTGGCCGCAGACGGCTGAACAGAGCAACCTGAAGCCATCTTCAGTTCTCATTAAACTTACACACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129849 lncRNA downstream 62261 12438750 ~ 12487395 (-) True G87746
TU129766 lncRNA downstream 202590 12344898 ~ 12347066 (-) True G87695
TU129706 lncRNA downstream 396919 12152240 ~ 12152737 (-) True G87660
TU129705 lncRNA downstream 398021 12151299 ~ 12151635 (-) True G87659
TU129650 lncRNA downstream 578832 11970529 ~ 11970824 (-) True G87610
XR_006252231.1 lncRNA upstream 60435 12613150 ~ 12638736 (-) True LOC122355629
TU130017 lncRNA upstream 251981 12804696 ~ 12807646 (-) True G87860
TU130240 lncRNA upstream 813238 13365953 ~ 13368320 (-) True G88003
TU130253 lncRNA upstream 876691 13429406 ~ 13432195 (-) False LOC122355808
TU130263 lncRNA upstream 881179 13433894 ~ 13434125 (-) True G88019
XM_043254206.1 mRNA downstream 727 12488769 ~ 12548929 (-) True myo1d
XM_043254155.1 mRNA downstream 68822 12472889 ~ 12480834 (-) False psmd11b
XM_043254154.1 mRNA downstream 68845 12472889 ~ 12480811 (-) True psmd11b
XM_043254114.1 mRNA downstream 77449 12448036 ~ 12472207 (-) False uts2r2
XM_043254033.1 mRNA upstream 3967 12556682 ~ 12564039 (-) True pdk2a
XM_043254132.1 mRNA upstream 101285 12654000 ~ 12665037 (-) True osbpl7
XM_043254037.1 mRNA upstream 113400 12666115 ~ 12667979 (-) True mrpl10
XM_043254039.1 mRNA upstream 118716 12671431 ~ 12675466 (-) False prr15lb
XM_043254038.1 mRNA upstream 118716 12671431 ~ 12673995 (-) True prr15lb
TU129639 other downstream 598501 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 714044 11832879 ~ 11835612 (-) True G87569
TU129464 other downstream 1227053 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 1503774 11042888 ~ 11045882 (-) True LOC122355648
XR_006252199.1 other downstream 3060344 9484946 ~ 9489312 (-) False ormdl3
TU129915 other upstream 96668 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 117910 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 199189 12751904 ~ 12752678 (-) True G87845
XR_006252221.1 other upstream 1059019 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 1059019 13611734 ~ 13691338 (-) False tcf7l2

Expression Profile