RNA id: XM_043254216.1


Basic Information

Item Value
RNA id XM_043254216.1
length 5539
RNA type mRNA
GC content 0.48
exon number 18
gene id brsk1a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 363606 ~ 381167 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTACGATCTGACAGCATGGCGGTATCGCGAGGGACGGATCCGTGGCGCGAGGCGCAGCGGAGGGAGggctgatgatgatgaggaggagggtGTGGGACCCGGATGCTGATGCGAGGAACCAGAGCGGAGAAAATAAGGTTTTACAACGCAAAGAAAGCCTCAAGATATTAGCACGTACCAGTCGCCGTCGAAAACACGAAACCCTTTCCCCAAAAGGCGAGAGGAAGCGCGCGGCGCAGGCGGAGGCGGGAGATGATGAGGATGCCGCGGTCCGAGGCTCAGCATCAGCAGCAGAGAGGAAGCAGGGCTGCCGGATCCGCCACAGCGATGCGAGAGGATGCGGGGCGACCTGGATCTCCTTCTGTCGGCTCGTCTCGCTCGGTGTGAGGCGGGGAGGTTTTCCACCCGCTCGTTTGACGGCGAACGGTGGAGAGAGAAATTGCTATTTTAAAACTGATTGAACATCCGCACGTGTTAAAACTCCATGACGTTTATGAGAATAACAAATACCTATATTTGGTACTAGAGCACGTTTCAGGAGGAGAGCTGTTTGACTATTTGGTAAAGAAGGGCAGATTGACGCCCAAAGAGGCACGAAAGTTCTTCAGACAAATCATATCTGCTCTGGACTTCTGTCACAGTCACTCCATatgTCATAGAGACTTGAAGCCAGAAAACCTCCTGCTGGATGAGAGGAACAATATCAGGATTGCAGACTTTGGCATGGCCTCACTACAGGTGGGAGACAGTCTGCTAGAGACAAGCTGTGGATCTCCTCACTATGCATGTCCAGAAGTAATCAGGGGTGAGAAATACGACGGCCGAAGGGCTGATGTATGGAGCTGTGGAGTTATTCTCTTCGCTCTGCTCGTGGGCGCGCTGCCCTTCGACCACGATAACCTGCGGCAGCTGCTGGAGAAGGTGAAGAGTGGAGTGTTCCACATGCCCCATTTCATCCCACCCGACTGCCAAGCTCTGCTGCGGGGCATGATCGAGGTCAACCCTGAAAAAAGACTCACGCTAGAGGCCATCCAGAAACATGCCTGGTATCAAGCTGGACGCAATGAGCCGTGTCCGGAGCAGCCGGCCCCGAGGCGCGTGAGCATGGGACGGATCATGTCTCTTACGGAGCTGGACCCAGATGTGCTGGACAGCATGTATTCTCTGGGCTGTTTCAGGGATCGGGTCAAACTGGCCCAAGACCTGCAGTGTGAGGAGGATAACCAGGAGAAGATGATCTATTATCTCCTGTTAGACCGTAAAGAGCGCTATCCTAGCTATGAGGATGAGGATCTTCCTCCCAGAAATGATATCGACCCTCCACGGAAGCGTGTAGACTCTCCCATGTTGACGCGTCACGGCCGCTGTCGGCCAGAGAGGAAGAGTCTGGAGGTGCTGAGTGTGACGGAGCAGGGCTCTCCCACACCCCCGCGCAGAGCGCTGGACACCTCCACACACAGCCAAAGATCTCGATCTGTAAGCGGAGCATCAACAGGCCTCTCATCTAGTCCTCTAAGCAGTCCCAGGAGCCCTGTCTTTACCTTCAGCGAGCCGGAGGTGGTTGCCGCCACCAAAGCTGGAAGCGGCAGCACCGTCGCTCGTCCCAACCGATCGCATGAACCCAAAACGCAGACGCTTCCATCTAAAACCACCCCCGAACGCCCCCAACTCCAGTCCATGAAGTCCCTCCCCttaccctcctcctcctcgcgcTCCCCCTCCCCTTCCCCCCTCCTGTCGCCCATTCCCCGTTTCCTCTTCTTTCCTTCTCCATCTGCGGTGCTGAAGTCGGTGACTAAAAGCTTGTATCCCATGTCTCAGGTCACCCCTCAGGGCTCTCCCCTGCCCACCCCGCTGGGTACCCCGTGCATCACCCGCACCCCCACCGCTACCccaccctcctcctcctcttcctcttcttcctcccgAGCCGAGGGAGGAAGTGTGGGCGTGGGCTCACTCTCCTTGACCCCACCCTCTAGTCCAGGGGGAGGCGGCGGCATGGCGGCCAGTAGCTCCGCCCACTGGAGGACACGCCTCAACTCACTGAAGAACAACCTGTTGGGGTCTCCGCGGTTCCACCGCCGCAAGCTGCAGGTGCCGACCTCAGAGGACATGTCCAGTTTAACACCAGAATCAAGCCCAGAGCTGGCTAAAAGGTCCTGGTTTGGGAATTTCATCAGTCTGGAGAAAGAAGAGCAGATTTTTGTGGTCATCAGAGACAAACCTCTTAGTTCCATTAAAGCGGATATCGTCCATGCCTTCCTCTCTaTTCCGTCTCTCAGTCACAGCGTAATCTCTCAGACGAGTTTCCGAGCCGAGTATAAGACTTCTGGAGGTCCATCTGTCTTCCAGAAACCCGTCAAATTCCAGGTAGACATCTCGTTCTCCGAGGGGGAACGAGAACGGGAGCGGGAGAGAGACAGGGACGGACAGAAGGATTACGGGATCTACAGCGTAACGTTTAGCCTCATATCAGGTCCAAGTCGCCGGTTTAGACGAGTCGTTGAAACAATCCAAGCCCAGTTGCTCAGCGCTCACGATCAGCCCATGGCGCAAACTCTTTCAGCCTTTTTCCTCTCTACGCTAGATGAGAAGAACGGTCGCCCTCCCAGAACGCCAACCAGACAGAACTCCCGGCGCTCAGAGGGCGGAGCCGACCGCTGCGAGTGGGTGGAGCGTGGAGAGGGCGGGGTTTTACTGCAGCGCAGGGGGTCGGGAAGAGAACGAACCCGCCTGCTTTCCTCCAGTGGGACGCAATCACAGCCCTGAGCCAGAAATGTTGCGAAGAATCAGTCCAGATACGAGCCATGATACTCAAATGTTTCCTTCCTTCTCCCCTTCTCACCTCGGAACAGCATGatggtaaaatgtgtttttaaaggagCTTTTTGAGAGTCTAACGAAACCAAATACTGATACGCATTGGGATGCTACCAAGCGAGAACCGTCTCTTCGACTTCTTGGAGCGCCTCCAAACGTTCTTCTGAAGCGTATTTAATTTATCATCCTGGACAATGCTTTGATTTATGCTGTATTTTCTCTCATGTGATTTGGATGTAATGTGAAAAACTTGAGTTTATAATGACATTCGTGATAGGAAAGGTTTCGGTTGGGGGTAGCGCACCATCTGTTCCTCACAGGCCTGGTATCCGTTTCATCAATCGAGTAATTATAGCAACGGAGACGTTAGTCCAATTTAGTCCGAATTTTTTATCCTCCGAGAAAACAAGTAGAGATCCAGATCCAAAAGCTATCAGCACCACGAGTCTGCTCAGTcatatgcaataaaaatcaataagcTACAAAAGATTCAGTTTAACAAAGCTGCACATGctgaatcttttaaaacatgattaCCTCCTCGAGCGGACAGACTCATGGCCATCTTATAACCGTAGTTAACCACCGTTGCTCACCAGCCCTGTGTCAGCTTCATTTCCACTCGCCATAGAAATGCCGCATGCTAAATAACGTCAAGCTTCGGCCCCTAATGCCCGATCGTGATTGTAAGACATTTCAGATCTAAATCTGGCCTCGATCCGCCCTTTCGGCAGCTCAAAAGTACGGAGGATTCCCGTTACTGTTGTCTCCGGCGGGAGTTCAGATGTAGAGTTTCCCATCTTAGATGCCAAAGGGAACGGGAATCAATCCGAAATATTAAAGGACGCTCATCCCGATTCTCTGTTGCTGCAAGACGTTTGGTTGAAGGCAACCAAGTGAATGTCGTTGACTATTTTAATAGCGAATTTTGGTTTATTGGAAATCACTTATTTGTATATTACTCCTGCGAATTCAAAAATGGCCATTaggtgtacatatgtatgtttaAGAAAGAATTGAATGTCTGAGGTATTAAAAATACGTATTTCGGGGGAATGGCAACTTAATCTGTGGTTCACTTTTCTTTTGGACAAGCACGCATGCGTGCTTTGTCggttttaaaagataaaaaaaatggactTTTTATGTCGTTTGGCGGAAAGGcagaaataattacaagatttcgTGAAGCCTCCCCCTCACCTTGTCAGTCAAACggattgcttttttatttcagttctcCCTACAagcgctcttaaaaataaaggttcttgtTATGGTTTCACGAAGAacttttaacatccatggaatcATTCCATTTCGCAAatggttctttagattattaaaatgtcacacaaagaaaaaaaaaatggttcttttactCAACGGACAAATCTGGTTCTTCTACGGcattgcagcaaaaaaaaaaaaaaaactactatttttttaaagaataaagctGGAACGGAAGAAAGCGTTTCAAATTCCCCCCCAAAAATCACACGCTTCACCTttaagaagaaaagagagaaagggagaaaagAGCTCTCTCTTGCTTGCGCGGTGTTACCGTAATGAGAGCGAAAGAAAGACTTCCTCTGGACATTATCTGATGAGGAAAATGTGCTGTACCTTGCGACCTAAAGAGGAAATTGAAAATTTGAATGGTATTGTAAGCAAAATAAGCCATTGTCTAGGCCACGGACCTTGCTCGCACCATCACGAAATATGTACATTCACATCAATTTGTCTCCAATTATGATTAtgatacagtataaaatatgaaattgatCTCTTTGTACAGCACTGCTTTGTCACTGGGCTTCCGTGCAGCGGTTATGCAACTGATCCAGCGTAATATATCCGAAAGAGGGACGCTCTCTCTGTATAAACGGCTTCTCTGCTCAACGGTTGTCACGAATCCTGTAAATGTGATCCAGTTTTTGTATGTCTCTGTGAGTTTTAAGTTGCCTGCGTGTCAGCTCttatcaattttttatttatttatttattgtatggaAATCGGTTGGCACCGAAAGGCCActtatatcatatttatatagtCTAAGCAAGGTTTGCCGTTTTGGGCAAGCAAACCGTAATCATTAAAAAACCGGCCAGTCCAAATCTGAGGAAAGCACTGTCCATttatgctgcaaaaaaaaagaatagcgtatgtgttatatttttgcATCATAGGTAATGGCACAACTAATTGGACATATCATAACTTGCATTGGCTATCGGTTGGTTAACATCGgtatatgtatttttaggaATAACAACCACTTAGGAACAGCATCGTCAAAGcaatattgattttgttttcatgttaaaACTGTCCAGGTTTCAGTCGCTTTTCTATCTGTGGTTATGTATGCGTGCGATATATGTTGACATCTCATTGGCCGAGAGTGAGCGGATCATGATCGTGCATTGGGACATTCGTGCACAGAGAGTCATGTGGACGAGTGCTCTGCATGTCGGACCACATTGCCCCTTGTATATCTGCTTTGAAAGtaaacatctgtgtgtgtggacGTGCAGTTGGAATGCATTATGCTgttgtgcacgtgtgtgtgtgtgtgtgtgagagagagagagagaaagagagagagagagagagagagggagggaagtGAAATGGATTCAGGATGGTCTGCTACGTAATCAGTTTAATAGGcgtcaataaaaataatcaacaagGTTTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252193.1 lncRNA downstream 164739 197400 ~ 198867 (-) True LOC122355220
XR_006252194.1 lncRNA downstream 166213 196901 ~ 197393 (-) True LOC122355221
TU125201 lncRNA downstream 192320 168124 ~ 171286 (-) False LOC122355191
TU125183 lncRNA downstream 222525 140100 ~ 141081 (-) True G84487
TU125191 lncRNA downstream 274032 88055 ~ 89574 (-) True G84492
XR_006252187.1 lncRNA upstream 1414 382572 ~ 385020 (-) True LOC122355197
TU125268 lncRNA upstream 1447 382605 ~ 385022 (-) False LOC122355197
XR_006252217.1 lncRNA upstream 4731 385889 ~ 386457 (-) True LOC122355423
TU125292 lncRNA upstream 96865 478023 ~ 478431 (-) True G84547
TU125294 lncRNA upstream 105523 486681 ~ 486965 (-) False LOC122355759
XM_043254372.1 mRNA downstream 3124 340273 ~ 360482 (-) False prr12a
XM_043254373.1 mRNA downstream 3294 340273 ~ 360312 (-) False prr12a
XM_043254371.1 mRNA downstream 3294 340273 ~ 360312 (-) True prr12a
XM_043254233.1 mRNA downstream 24613 333577 ~ 338993 (-) True irf3
XM_043253531.1 mRNA downstream 45077 298608 ~ 318529 (-) True LOC122355359
XM_043253631.1 mRNA upstream 26198 407356 ~ 434276 (-) False mapta
XM_043253642.1 mRNA upstream 26198 407356 ~ 426631 (-) False mapta
XM_043253636.1 mRNA upstream 26198 407356 ~ 426631 (-) False mapta
XM_043253639.1 mRNA upstream 26198 407356 ~ 426631 (-) False mapta
XM_043253632.1 mRNA upstream 26198 407356 ~ 426631 (-) False mapta
XR_006252248.1 other downstream 3294 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 3294 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 3294 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 42346 319330 ~ 321260 (-) True G84521
TU125173 other downstream 240839 115719 ~ 122767 (-) False G84485
TU125629 other upstream 509974 891132 ~ 897030 (-) False dlx4b
TU125823 other upstream 1489615 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 2112552 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 2386750 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2709627 3090785 ~ 3092413 (-) False LOC122355711

Expression Profile