RNA id: XM_043254221.1


Basic Information

Item Value
RNA id XM_043254221.1
length 1926
RNA type mRNA
GC content 0.38
exon number 13
gene id LOC122355682
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13414181 ~ 13418256 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGAAGAGACAAAGCACCTTACGTTTCCTCCAAAACTGCCATCACAACATAAATGTGAGAACTTTTCAGAGGACACCGTTTACTGTGACACAAgAACTAAAGCAAACATCAAGATGTCCAACAAGAAATCATAACTGCACAGTTTTACAGTGAACCAGCAGTGGAGGATATGTACACTGGATACCTGGTCAAGTCCCCCCCTTTAACTGCACTAACTAAAAACACTAAATCATGGAAGCGTCGCTTCTTTGTGCTCTCCAAGACCACTGAAGACTCCTACCAGCTGACATACCATGTAAACAACGAAAGGAGAGACAAGCCTTTGGGAGAGATAGACATTTCTAAGATCAGCCTGCTGTTCACTGGCCCTGAGACACATCAGAAGTGGGACTGGGTCAAGAAACAATCTAAGGGCTCTCCATCCTCTGTGCTGTTCTTGAAGGTGGAAGACGACACAATAAAACACTCGAGAGAATATTTCCTCATTGGAGAAAACAGTGCTGATGTGGATGGTTGGCTCAATGCATTATTCAAGGCAATGAAATCCCAAAATATACCACAACATACAGACGATACTCAGGAAATGAGATCTAGATCAATGTCTGTACCTGTCAATGGTCCAGAACAAAAAGGTGAACAAAATACTGATGACAGATGGTCAGCATTTGAATTAACTTCTCCACCACAATACGATCATTATGACTATCCTCGCAAGCTCAGCGGAACTCAGCGAATACCAATTCCAATTACTGAGGAAAAATATGACATGGACAGGAAGCAGGATGAGCCTCCAGAGGACAGCAATGAATACATGTCCATGGGATTAGTGCAAAGGGTGAAAGATGACCATCAGGAGGATGACATGGCATGCAAAGAGAAGCTTGAAGTTCACAGGCATTCTAATCAATCTCTTGTTGACTACACTGAAAACGGTGCCTCTACTGAGCCAGACAAAAGtgaaacacacacagatgttaaGAAGGAGACCTGCGTTAGTCAAAATGATCTGAAAAACAATCTGGTCTTGACACAAGAAGGCAGCAAACCATGTGCGTCTGAGTGTCATCAGATTCAGGACTCAAGGGGGGACCTGCCTCCAGACACAATACAAGACAttcagaaatgcataaaaagacTAAGCAGAGATGAGATAAAACTCCTTATTCAGCGACTTCCAGGCCTCACTCTGAACCCTGCCCATGAGGATGCAAAACAAAGTGTGCGAAATCTCTTATCACCACCAAAATAATAGAAGTATTGTACAGGTCAGAGGGTCTGtggaatattaaaatacattcatttactCATACAGGTAGAAAAATAAGCCATTATCAAGTATCAAAAGAGAAGAggcaatcagtttttttttgcctgtacAGTAATCATGAAacaaaaagggaagaaaaagaaagaaaagatgtgTTATTTATACAAGTTACAAAAGtgcctttgtaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagagagagagagcacatttattaatattaagcctaaaatgtgttttaatgtcactactCTGAATAGTTCCACTTTAGCAACcaaatatacttcagtatatcTTTAGTTTGACTTCAGCACTACTAAGTAcaatttagcagactttaaATCTACCAGTTCTGTATACCAAAAACTGCAGGGTATTTTTATCAAGTATTTGTAGTGTActtagcattaaataaatattgacttATTTTTGACTAGAGTGGTAgagtactgtatatattcatttgttttaaatatctaGTATTACTTCGAAACTAGTACAAAAAGTAATCCACAGTAAAGGACTTGATTGTTATTTTACGCATTGTTACATTGTGATGTGTTATTAAACTACCCATTTAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130240 lncRNA downstream 45861 13365953 ~ 13368320 (-) True G88003
TU130017 lncRNA downstream 606535 12804696 ~ 12807646 (-) True G87860
XR_006252231.1 lncRNA downstream 775445 12613150 ~ 12638736 (-) True LOC122355629
TU129849 lncRNA downstream 926786 12438750 ~ 12487395 (-) True G87746
TU129766 lncRNA downstream 1067115 12344898 ~ 12347066 (-) True G87695
TU130253 lncRNA upstream 11213 13429406 ~ 13432195 (-) False LOC122355808
TU130263 lncRNA upstream 15701 13433894 ~ 13434125 (-) True G88019
TU130280 lncRNA upstream 40263 13458456 ~ 13459865 (-) True G88034
TU130281 lncRNA upstream 41952 13460145 ~ 13461245 (-) True G88035
TU130329 lncRNA upstream 120498 13538691 ~ 13539383 (-) False entpd1
XM_043254222.1 mRNA downstream 3900 13405793 ~ 13410281 (-) True plekhs1.1
XM_043254151.1 mRNA downstream 15794 13381644 ~ 13398387 (-) True nhlrc2
XM_043253077.1 mRNA downstream 38693 13372489 ~ 13375488 (-) True adrb1
XM_043253063.1 mRNA downstream 80061 13325153 ~ 13334120 (-) False tdrd1
XM_043253053.1 mRNA upstream 524 13418717 ~ 13422958 (-) True LOC122355076
XM_043253054.1 mRNA upstream 524 13418717 ~ 13422624 (-) False LOC122355076
XM_043254359.1 mRNA upstream 6115 13424308 ~ 13432062 (-) True LOC122355808
XM_043254186.1 mRNA upstream 18714 13436907 ~ 13444732 (-) False casp7
XM_043254187.1 mRNA upstream 18714 13436907 ~ 13444729 (-) True casp7
TU130001 other downstream 661503 12751904 ~ 12752678 (-) True G87845
TU129915 other downstream 738709 12649383 ~ 12675472 (-) False prr15lb
TU129914 other downstream 738709 12670625 ~ 12675472 (-) False prr15lb
TU129639 other downstream 1463026 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 1578569 11832879 ~ 11835612 (-) True G87569
XR_006252221.1 other upstream 193541 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 193541 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other upstream 193543 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other upstream 195954 13614147 ~ 13691338 (-) False tcf7l2
XR_006252179.1 other upstream 554689 13972882 ~ 13976511 (-) False srsf2a

Expression Profile