RNA id: XM_043254223.1


Basic Information

Item Value
RNA id XM_043254223.1
length 2896
RNA type mRNA
GC content 0.49
exon number 10
gene id fam20cb
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8009380 ~ 8046039 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAGCGAGCCTGGGCTGTCTGTCCTGCTGTTTTCAAGCTCAGCCAATCCTCTATGTGCGAGGGGCTTCAGCATCATGATATTTAACACACCCACCCTGAACATCCGACAGAGGTATTTCCTCAAGCGCCTGTCAACGGGCGAGCATCACCTTCACACGAGCTGGATGTTCAGCAAGAAACGCTGAAACTTTCTCCAAAGATCACATTTGTCGACGGGAGGAGGTGCGATGCCACACTTTCTCGAAACCTGCCAGGGCTGCCATGCGTCTCGTCGCTTTCAACGATTGAGCAGCCTCGATTTATACCGGATAAGAAGAGCGAATGAACTTGTGCAGCTGTGAAAGCGATCTCGTGCGTTGTATGAATAGCGACAGATGTTTCCTCCGCACGCCGAGATGGACCGCGGCACCGCGAACACGCACTTTTGTGGATCATTTATCTGACGAGGCTCGACTTCGTTACACCTCGCCATCGTCTGCGGCTATTAAACGTTAAAATAGACTATGAGTTGTTGTGTCGGAGATTGTTCCCGCGTCTGACCGCACGGGAGGAATTTAATCGCGAGCGCACGTAAATAACTGGATTATTGTTTCGCGTGGATGTGGATGAGCGCTTTGCTAAACAAATCCCCATTTCTGCCCCGAAGCTGGCAAATGAAAACGAAAACGTTCCATGTGTTCTTCTCACAAATTTGGGAGCCCGTGTTTTATGTACTGTTGGCGATGTAGTGCGCTTGCTCACTTTTATCCCTGCCGTTCCAAACAAGTCTTTTCTCGAACGGGAGACCCTGAAGATGATCCTCTTCAGAAAATTCCGCGTCTTGATTCTGATGGTGTTTCTCATAGCCTGCTCGATGCACATTATGATAGACTTGTTACCGAAGCTGGAGAGACGGAGCAGTAGCGCGTGCTCGTGCTCACACACACCCAGCGAAGAGCCGCAGAACTGGGCTAAGCATCGAGCCAAGCCGGGATCAGAGTCCGGCTGGCCTAATAAACACACCCTCAGAATACTTCAAGACTTCAGTAACGAGCCGAACTCAAACCTGTCGTCTCACTCGCTGGAGAAGATCATCGTTGGGGAGAGATCCGAGGCTTTGAAAAGGTTTGAGCAGTTGACAGGTGACGAGAAGAGGCACACGGCACGGGACTCTGTCTTGAAGAACGCAGCTGTCAAGGGTTCGAGGCTCTCCGCGCTGTTTGAGCATCCTTTATACACCAGGCCGTTGCCTTCTTTAACCGACGAAGACACTTTATTCAATGTCAACACTGATATAAGATTTGACCCTAAAGCTGCAGAGAACCCAGAGTGGAATGGGGAAGGTAAAGATGGGGATTATGCTCCTACGGGTGAGATGTCCTCAGACTCCTATCCAAATTGGCTCCGCTTCCACATTGGGATCAACCGGTATGAGCTTTACTCCAGGCACAACCCGGTCATAGATGCAATGCTGAAGGATCTGGTGTCGCAGAGAATTACCAGCGTTGCGATGAAATCTGGAGGCACGCAGCTGAAGCTCATCATGACATTCCAGAACTATGGCCAAGCGCTCTTCAAGCCCATGAAGCAGACACGGGAGCAGGAGACACCCCCAGACTTCTTCTACTTCTCAGATTTCGAGAGGCACAATGCTGAGATCGCAGCATATCATCTAGACAGGATTCTGGATTTCCGCCGAGTGCCGCCGGTGACTGGCCGTCTGGTGAATATGACTAAAGAGATACGAGACGTGACCCGTGACAAAAAGCTGTGGAGAACCTTTTTCATTTCACCAGCCAATAACATCTGCTTCTACGGCGAGTGTTCGTACTACTGCTCCACTGAGCATGCTCTGTGTGGGAAGCCAGACCAGATCGAGGGCTCTTTAGCAGCATTTCTGCCCGACCTGGCCTTGGCCAAGCGCAGGACCTGGAGAAACCCCTGGAGACGATCCTATCACAAACGCAAGAAAGCAGAgtgGGAGGTAGATCCAGATTACTGTGAAGAGGTGAAGCAGACACCACCCTACGACAGCGGCACGCGCCTGCTGGACATCATGGACATGACCATTTTTGATTTCCTCATGGGAAATATGGATCGTCATCATTATGAGACATTTGAAAAATTCGGAAACGAAACGTTCATTATTCACCTTGATAATGGAAGAGgcTTTGGTAAACATTCTCATGATGAGCTCTCCATACTGGTGCCTTTGAGTCAGTGCTGCAGGATGAAGAAGTCCACTCATTTACGGCTTCAGCTGTTGGCTAAGGAGGAGTTCAAACTGAGCGCTCTGATGGAGGAGAGTCTGCGAACTGATACGCTGTCGCCCATCCTCATTAGGCCTCATCTAGAGGCCATGGACCGCCGGCTGCGCCTGGTGCTCCAGGTACTGGCCGACTGCATTGAGAAGGAGGGCTACAGTAACGTAGTAGAGGAAGACCTGCTTGCGGAGGGCTGGAACACGGGCACACCTCCACAAAGGTAGTGGGCACAGACTGTTCAGGTGCCCTTTGATGTCCCTCCCCCCCGCAGCTCTATAGACCGTGAACGTCTCGCAAGAGATGCTCTTGTTGATAAACTTTTCTGAATTCAGTGAATTCCAAAGACTCGTTCCTCAACTAATGGACCGTGTGTTCAAATAAAGACACGCgggagacagagaaagagaccgTGTTCTGCAGTCCTGCGTTTAAAATGGAAGCTGAACTTCACATGTAACATCCAGCGTTGTAAAGCAGTGCTTCTCAACTGGTGGACCGTCACCTTAAAATAGGCTGATGTGGACAGCAAAGAAAAAACGacacaattaatcaaataattataataaaaataaaagtgataacagtcattattagtagtagtagtagtagtatcgcagcttataaaatacaaagcaaataataataataata

Function

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127808 lncRNA upstream 162518 7846558 ~ 7846862 (+) True G86374
TU127671 lncRNA upstream 165297 7825272 ~ 7844083 (+) True LOC122355675
XR_006252237.1 lncRNA upstream 165597 7833102 ~ 7843783 (+) False LOC122355675
TU127670 lncRNA upstream 175235 7825272 ~ 7834145 (+) False LOC122355675
TU127673 lncRNA upstream 285519 7720392 ~ 7723861 (+) True G86268
TU127924 lncRNA downstream 10892 8056931 ~ 8060176 (+) True G86460
TU127947 lncRNA downstream 59109 8105148 ~ 8106773 (+) True msrb1b
TU128039 lncRNA downstream 149946 8195985 ~ 8196196 (+) False hbbe2
TU128041 lncRNA downstream 152055 8198094 ~ 8198410 (+) True G86540
TU128037 lncRNA downstream 157544 8203583 ~ 8204143 (+) True G86536
XM_043253559.1 mRNA upstream 37826 7902114 ~ 7971554 (+) False LOC122355373
XM_043253562.1 mRNA upstream 37826 7902114 ~ 7971554 (+) False LOC122355373
XM_043253561.1 mRNA upstream 37826 7902114 ~ 7971554 (+) False LOC122355373
XM_043253560.1 mRNA upstream 37826 7902228 ~ 7971554 (+) True LOC122355373
XM_043254169.1 mRNA upstream 118893 7886687 ~ 7890487 (+) True tmem130
XM_043254182.1 mRNA downstream 3537 8049576 ~ 8052386 (+) True foxl3
XM_043253174.1 mRNA downstream 36595 8082634 ~ 8085604 (+) True noxo1b
XM_043253175.1 mRNA downstream 36661 8082700 ~ 8085604 (+) False noxo1b
XM_043254352.1 mRNA downstream 40052 8086091 ~ 8089327 (+) True rnf151
XM_043254416.1 mRNA downstream 56660 8102699 ~ 8105036 (+) True neurl2
TU127672 other upstream 165297 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 701151 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 704532 7303138 ~ 7304848 (+) False G86142
TU127344 other upstream 1486809 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 1567854 6440821 ~ 6441526 (+) True G86019
unassigned_transcript_1921 other downstream 659221 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 790409 8836448 ~ 8852449 (+) False arsg
TU128728 other downstream 1711234 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 1825625 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 2435576 10481615 ~ 10487341 (+) False LOC122355192

Expression Profile