RNA id: XM_043254233.1


Basic Information

Item Value
RNA id XM_043254233.1
length 2084
RNA type mRNA
GC content 0.48
exon number 11
gene id irf3
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 333577 ~ 338993 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGACGTCAAAATGGGAAATCGAAACTGACACGGATTTCCCGAGTAATGTTCAACACCTGATCTTAAAACACGAACGGTTGAAGAAAGTCGAGCATTAAAGCGGCACTGGCGATAAAACCTCCCGAAGAGCTCGCCGAAGAACTCAAGAGCCCACAGAACAAACCCCTCTTTTGCTTCACACCGTTAAAGAACCGCACGTCGCTGGTTGGATCGCATCGCTATGGCTCAACCTAAACCGCTCTTCGTGCCCTGGCTGTATGAACAGATCCAGAGGGGAAGGTATCCCGGAGTGTGCTGGACCGATGAAGATCAAAGACAGTTTAGCATTCCCTGGAAGCACGCTTTAAGACAGGACTCCAGCAGTGATGATGTCCTCATATTCAAGGCGTGGGCTCAGACGAGCGCCGCCGGAGATGGCAGGATAAATGGAGATCCCTCCGTCTGGAAGAGAAACTTCCGTAGCGCTCTTCGCGCGAAAGGCTTCAAGGTGATATTTGACGACAAGAACGACGCGGCTAATCCACATAAAGTCTATCAGTTTCCATCTGAAGCTCGTTCCGCAGCGTCAGGATCTGAGGGCTCTCAGGAGACTGATttCTCGCCAGAGCTATGCGGGGAAGATAGCGACGTGTTCCCTAcacatcCACAACCAGGTTTGGAGAGAGATTTCACAGGACTAAACCTCGAGGAAAGTCCCTCACGAGTTAATGAAGTTTGGAATCCAGATCAGCTATATCTGGGGCTCGAAGATCAAGGGCCCTTCCAAGAAAGCAGTCCAGAGCTCAGCTATCAGATTACGGACACTTGTGTGCCCTTTTCTTCCCCTGAGGGCTGTGTTGGTGGTTTGGGGCAGACCTCGGCGGCTGTGTATCAAGCGGATGGAGGAGGCGTGGGTCATCACACTAGCATTCCTATGGCCAAACTGGAGACTTATTTTCGGATTAAGGTTTATTACAAAGGGAAGATGGTGAAGGAAGAGTTGGTGGAGAATGTCACCGGTTTCAGACTGATGTATCAGGAAAACATGGACGAGCTCGACTCGACGGGCGGCGATCTGGCAGTGGTCCGGCTGCCCGTTCCTGACGGTATTGTGGATCAGATCCAGGCCAAGCTCACCAATGAAATTCTGAGTAATCTGGGGGGTCTGGAGGTCAGGAGGTTGGATGGcgtggttttgggtcaccgttgGGGATTGAGCAGGATCTACTGGAGTCTATGCAAACACGAAATCAGCCAAACACCCAGAGAGCTCTCcaaaaacacacctgaagctaTCTACCTTTTCAGAGATTATATATCAGGTTTGATAGAGTTTATGCAGACAAGCCAAGAATCTCCTTCCTGCACTCTTTACTTCTTTCTGGGAGAGAAGTGGCCTGACCCCAAAATGAAGCCATGGGAGAAGAAACTCATCATGATAgagGTTAATTTGACTTCGCTGGAGGACCTGAAGACGATGGCTGTGGCGAACGGGGCGTCTTCTCTGCAGTCGGTGGAGCTCCAGCTCTCTCTGGAGCAAATGATGGAGCTGTGTTAGAGAGGTGGAGCTGCGACCGAGACGAAAGGCCTGACCTGGCTCCTGAATTCAAACGGTTTACTTAGTGGTGGACCAGtgcttaattgtatttattgaagGTGTGTGGACTTCAGTAATGGTACAAGGGAAGTGTCAGCGATTTTGAAGATAAGTTAGCAATtagaaaaagttaaaataaatgttgtttgtaaATGGTGTACATTATGATTCAAATCCAAGTCTAATGTATCTGTTTTTACACTACCACAGTGCTCTTAACAGTCTGTTTACAGTATGCTCTTTAGTCTTTTCTTGGCCTGAATCTCAAATGTTGTTTCGTGTCTTTCGTGCACTTAGCACCGTTGTCGTGCAAATCCTGGAAACCTCAGGGATTTTTATGTGTTTTCCAGGCCTAGCAACTTCTACAATGTCCTGGAAAAGTCGAGAACATTTCCATTCTACAATTCTACCATACAGTTCTATTCTTTTTTGTGCGGTTACGCTCTGTTCCAAACATTTCATTGGACAAATGTTGATTTTGAAGAGTAAAACCTGTTTGGTCAGA

Function

GO: NA

KEGG:

id description
K05411 IRF3; interferon regulatory factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252193.1 lncRNA downstream 134710 197400 ~ 198867 (-) True LOC122355220
XR_006252194.1 lncRNA downstream 136184 196901 ~ 197393 (-) True LOC122355221
TU125201 lncRNA downstream 162291 168124 ~ 171286 (-) False LOC122355191
TU125183 lncRNA downstream 192496 140100 ~ 141081 (-) True G84487
TU125191 lncRNA downstream 244003 88055 ~ 89574 (-) True G84492
XR_006252187.1 lncRNA upstream 43579 382572 ~ 385020 (-) True LOC122355197
TU125268 lncRNA upstream 43612 382605 ~ 385022 (-) False LOC122355197
XR_006252217.1 lncRNA upstream 46896 385889 ~ 386457 (-) True LOC122355423
TU125292 lncRNA upstream 139030 478023 ~ 478431 (-) True G84547
TU125294 lncRNA upstream 147688 486681 ~ 486965 (-) False LOC122355759
XM_043253531.1 mRNA downstream 15048 298608 ~ 318529 (-) True LOC122355359
XM_043253533.1 mRNA downstream 35463 292041 ~ 298114 (-) True LOC122355360
XM_043253534.1 mRNA downstream 35861 292041 ~ 297716 (-) False LOC122355360
XM_043253532.1 mRNA downstream 35921 292041 ~ 297656 (-) False LOC122355360
XM_043254321.1 mRNA downstream 42922 272266 ~ 290655 (-) True LOC122355757
XM_043254372.1 mRNA upstream 1280 340273 ~ 360482 (-) False prr12a
XM_043254373.1 mRNA upstream 1280 340273 ~ 360312 (-) False prr12a
XM_043254371.1 mRNA upstream 1280 340273 ~ 360312 (-) True prr12a
XM_043254211.1 mRNA upstream 24613 363606 ~ 381160 (-) False brsk1a
XM_043254216.1 mRNA upstream 24613 363606 ~ 381158 (-) False brsk1a
TU125247 other downstream 12317 319330 ~ 321260 (-) True G84521
TU125176 other downstream 203592 78617 ~ 129985 (-) True G84486
TU125174 other downstream 210810 12045 ~ 122767 (-) True G84485
TU125173 other downstream 210810 115719 ~ 122767 (-) False G84485
TU125181 other downstream 225927 78617 ~ 107650 (-) False G84486
XR_006252248.1 other upstream 1280 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other upstream 1280 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other upstream 1280 340273 ~ 360312 (-) False prr12a
TU125629 other upstream 552139 891132 ~ 897030 (-) False dlx4b
TU125823 other upstream 1531780 1870773 ~ 1947412 (-) False ank3b

Expression Profile