RNA id: XM_043254241.1


Basic Information

Item Value
RNA id XM_043254241.1
length 559
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC122355698
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8634892 ~ 8636912 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttATGTTCATGTATTATTGAGTCCAGTAGGCGGCAGTAAGACGCTGCAGAGCCTTCAATTCAAAACATCGGAAGAAGAAAGTTCGGAGGTCATCGCTGCATCGCCGCTAGTGTGTGGCTAGCAGTCTGCGGTTGTTCTTTTACAATGGCCAAACATCATCCAGATTTGATTTTTTGCAGGAAACAGGCTGGCGTTGCCATTGGAAGACTATgtgaaaaatgtgATGGCAAATGCGTTATATGTGACTCTTACGTCAGGCCTTGTACACTGGTTCGTATTTGTGATGAATGCAACTATGGGTCTTACCAAGGACGCTGTGTCATTTGTGGAGGTCCTGGAGTATCTGATGCCTACTACTGCAAAGAGTGCACCATCCAGGAGAAGGACAGGGATGGCTGCCCCAAGATCGTGAACCTCGGCAGCTCGAAGACCGACCTTTTctatgagagaaaaaaatacgGCTTCAAGAAGAGGTGAAGAAGCGGAGGGATTTTCTTTGTCACAGtcatttttaccattttgttATCGGACATGttacaataaaattgttttaatgttg

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0016363 nuclear matrix cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K12834 PHF5A; PHD finger-like domain-containing protein 5A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128431 lncRNA downstream 4685 8627094 ~ 8630207 (-) True G86809
TU128416 lncRNA downstream 5920 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA downstream 8563 8623297 ~ 8626329 (-) True G86807
TU128385 lncRNA downstream 96686 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 121647 8511635 ~ 8513245 (-) True LOC122355061
TU128455 lncRNA upstream 38734 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA upstream 38734 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA upstream 43193 8680105 ~ 8744645 (-) True G86826
TU128502 lncRNA upstream 184968 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 201439 8838351 ~ 8838612 (-) True G86852
XM_043254454.1 mRNA downstream 22431 8611249 ~ 8612461 (-) True cby1
XM_043254453.1 mRNA downstream 23668 8606637 ~ 8611224 (-) True slc16a8
XM_043254384.1 mRNA downstream 28754 8602210 ~ 8606138 (-) True pdap1a
XM_043253682.1 mRNA downstream 33978 8591741 ~ 8600914 (-) True sh3bp1
XM_043253204.1 mRNA downstream 64818 8556275 ~ 8570074 (-) True tnrc6ba
XM_043254240.1 mRNA upstream 499 8637411 ~ 8638883 (-) True LOC122355697
XM_043254245.1 mRNA upstream 31484 8668396 ~ 8681985 (-) True kctd17
XM_043254248.1 mRNA upstream 31484 8668396 ~ 8681982 (-) False kctd17
XM_043254247.1 mRNA upstream 31484 8668396 ~ 8681981 (-) False kctd17
XM_043254276.1 mRNA upstream 45531 8682443 ~ 8687548 (-) False plbd1b
TU128398 other downstream 22447 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 115783 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 116527 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 274912 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1245982 7388236 ~ 7388910 (-) True G86203
XR_006252240.1 other upstream 46140 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 50586 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 238705 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 844647 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 844718 9481630 ~ 9489290 (-) False ormdl3

Expression Profile