RNA id: XM_043254248.1


Basic Information

Item Value
RNA id XM_043254248.1
length 4427
RNA type mRNA
GC content 0.38
exon number 6
gene id kctd17
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8668396 ~ 8681985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGAATACGAGCCAATCAACCGCCGCGCTTATTCTACTTCTATGATACGGACGAAACCGGTAGCACGCCGCTTCACCGCGGGACACAGAACGGCATCAGAACAGCATCCGAGCCGCACCGACAGCCCGCTTATATACCGCCCGCCAGCCTCAGTGTAGTTCCCTAATGGCAACGGAGGACAAAGGAAAAACGGCGGCGCCTCAGGCTTTACCGGAAACGGGATCCCTCTCAAGAACGAACAGCAACctgaacaataataacaacaacaataataataacaaagacAACGAGGGAAGCGAAGGAGCCACAACAGGCACATCTACTGCTGTTGAATCCGGAGGGGCAGAAAATATCATAGGAAACGGTTCAGCGGTTAATACTGCCGGAGGTAATAACGGCAAATGGGTCCGTCTCAACGTCGGCGGGACGGTGTTTCTAACGACACGACAAACGCTGCTAAAGGAGCAGACTTCATTTCTGTACCGACTGTGTCAGCAGCAGGACTTGCATTCTGACACGGATGAAACTGGTGCTTACGTGATTGACCGAGACCCTACCTATTTTGGTCCCATACTCAACTATCTGCGACATGGGAAGCTGGTTTATAACAAGGAGTTGGCAGAAGAAGGTGTCTTGGAGGAGGCAGAATTCTACAACATCACACCGctgattaaattaatcaaagagAGGATTCTTGAGCGAGACTCCAAGGCCACACAGCAGGTACCACCAAAACACGTGTACCGAGTGTTGCAGTGTCAGGAAGAGGAGCTGACCCAGATGGTGTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGGTCAGCGTGCGCGCCTGCCGAAAACCCCGCCCCGGACTGCTCTGGACTATGGTGAACATTGGCTCATCTTACAGCTATGGAACAGAGGACCAGGCTGAATTTCTCTGTGTGGTGTCGAAAGAGCTGCATACATCGGGTGGAGGTTTGGGGACAGAGCAGAGCCACAAGACTAAGCTTTTCCAGATCCATGGGTCCCGGATGTAGGATacaaagagttttatttttctagaCATCCATTTTATCATGTGCTCATGATGCTGTTTTTATAGCCATACTTTTTTAGATTTGTTGACTTGAACAACGGGTATTAGCGGGAGGCAAGAACTTCACATCCAGCagcaaaaaatgtcattgttttaaattgaaatgttcCTGAAAACAAAAGTCACCTAAGGTATTAAAGAAGAACACAGTTTCAGTCTTAGTACATGACCAGCTACCAAAGAGTGCAACCTAGTTATGGGACACTACTcaagaacataaaaatgcatttaaaaaagttagtCTGGTTTAGTCAGGAAATACATTGTCATCAAGGATGGAAAGACTGTGTGGATTTGAGGCCGTAATCCGTTATTTAGTGTTTAGGTTAGAGTTTAGGTTTTACACATTTACTATTGCAGAAGAAGGGCAGCTCTGCTACATGAACAGGTCACGTCCTGTTCCATTTAGCATTGGCTGTGGGTAAAGTGCCAGCAGTGTCACCCTGGCAGACCACCAGCAGTGCACTTTAGCCCCATTTACAGTCTCTGGCAGTTCATTTTGATAGTCGTTGGCGCCAGCTAGAAGGTCAGGGTGTCATTAGAGGTCACTGGGATACTGTAGTTCTGGTTATGTTCGTATACCGTATATGGATTTCTAATAGGTTTTAGGCTCAGTTTACTTAAAGTGAAGTTCAGATAATGTGCTGGAATATGATACCGTGTCACTTgctaatgtgttttgtgtgaagGCTAGATTTCTTTCAAAGGAACAAAGCCTGGCAGTCGAAATCTTTCAAATCAACATGCCTCGATTCAACAAATGATCAAGTACTTTTTGCTCCCTTTAGCCTACAGCTGTGCAAATTAGCATTCTTTGGGATATTTATGTGCTGTGGGCTGGTTTGCATGCCTAagcttgtttattattaaatatgcttaACAATTTTGCACATTCGCGAAGATACAGTGCCCCCAAAACATGTTTGGACACTTGAGCCGTAGTTAAACATGGATGAATGTGATTGCGTTATGTTACAAACCAAGTGGCTGATAGCACAAGCACACTTTTGAAGCAAAACGGTTCTTCAAAGGATGTTTATTAGGATTTTATAGCTACTTTAACAGGACACCAATTTTAAAGGAGCCATTGACGTTGTACtgtaataaagcaataaacccTAAGGAGCCatggtttacagtgaatttataacAGCCAAGGGGCATATTAGTGCCTAAAATCTTCTTAGCTGTTATAAATTTACTGTATACCACAGCTTTACAGGGATTACTGCTTTTATAAAACGGTTATTCCATATACCTAACAAGAtgtcacaaaacaaataaaatacaatattaatacaaatattcatCAGCCACGTAATATAGTTCCTCAGAAACGGTTGAGGCTGCTGAGCAACACGCAGAGGCATATGTAGAGCAATTTACAATGAATGtggctcaaccaatcagaaccaAGGGCCGaaactatttgttttataaGCTATCTTATAAAATAGCCtacctttttaattttggaCTGTAGTAGCAAAGAGAAAGATATAATGGGTTCATGTGCTGGTTGAACCGAGGCACTAAATCAGTCACTTATGCTGCATTAAAGAGCgccaaatattgttttttgaaTGTCGTTAAGAATTAAGCAGAATTTTAAAGCTGATACTTACTAAAATGTAACAGAGCACAAAGCTTATTGCGATTATTGGACAGCAAGTGCACTACGAATATTATGAAGTTCACCCATCTACAGAACACAGCATGTAGACTAAAGATTTTGAGAAGTAGTAGTACTGATTATAATCggtaataatattgctaataatctgtgaaaaacaatgcatttcaaaaagGCGGGGCAGATAAGAACAACTATAATGTATGGTATGTGGAAaacaatttgatatttttttttaagctaaaactaaaagtatTTTGTCACACTTAATacacaaaatacagtttttttagcaatgtcatatgacccctttaaatcaTAGCATGTAAATTTAGTGGCAATCTCAGTAAGAATTTCACtcacaaattcatatttttggttGCAACCTGGAGGcctgtatatacagtacatacataaaaataaaaaaaaatgctttgttctGAGAAAAgctcatgttttatttgtttgcagatGCCACTTGGTTTGTATTTCCCACTGAATGCAGTCAAATTCAATTTTTGAAATGTGACATAAGTGTTTAGAACCTATATTTGGATGGGTAAAAGGATTTTGTGTCATCATCTTTGATGACAACATTATCATTGTCTTTTTGTAAACATCTGACCTATTATTATAACTGCATTTTTACAGAGGAAAGAGGCGTTTGCAAACACTATTTTATAGCTCTGTGTTACTGGGTCAATCAATTCTTATTCTGTCCTCATTAGCTACCACTATGTTCCAGAACTGTGAGCATAATTGTTTCTAGACACAGAATAGATATCACAGAAAGAGATATCAAACTCTTAACTGTGTAGACTGATGTATAGAAGAAGGAAAAGTTTTGATACAACACATATCTTATTAGTGTGTTAGTGCTGTACACTATAGTAAAATCTTTCAGTTTGTACTGGTGTGTTGAACAAATTTTATCACTGCATTAAATTTCATTATAAAggtatgttttagttttaatgtttatctTGTTTGTGTTAATAGCAACCTTTTTATATGGCCTTTTTTATAATCATACTGTgccatttatctatttattttagtctAATAAATGTCAGGTTATGTTACCTGTCAAGGCACAGGTAATATTATGGtttatattgaattttattcTGCAGACACacaatgttaattttattttttttatgcctttGTTACATGTATGTTATGTTTTCTAGTCAAAAACATTGTCATTGTCATCAAAATGACCCccctttatttttgacaaatgttatatttatgtgcattgtTTATACCATTTTTTCACTGCTCTcgcattatatttatttatgaaatatggGATGTGTAttggcttatttttattttattttttttgtgttaaaagtgacttttttccttttataaacGTCCTTTAGATGTAGAATTCTGTACATTAATTCATACTGCATAattcttcatttttgattagcaCTGAAAGCACATCTGCCTGTTGAAACAAACCCCtcaagttaataaaaaaatgtagtaataattattaaaagggTTTTGTTGCAACGGGGCACAGTCTCTTAGTAGTGTATGTATGCCAAAGAAAATTAGAATAATGTCTGTTCAGCTGAGAGAATATCTTTTAGCACGGAAAACAGTCGTTAATTAGATGTCCAAGCAGCGTCGTTGTGTATATAGTTATCAAAATGATTTCAATAAAGTTTagagtttctttttaaaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128431 lncRNA downstream 38189 8627094 ~ 8630207 (-) True G86809
TU128416 lncRNA downstream 39424 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA downstream 42067 8623297 ~ 8626329 (-) True G86807
TU128385 lncRNA downstream 130190 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 155151 8511635 ~ 8513245 (-) True LOC122355061
TU128502 lncRNA upstream 139898 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 156369 8838351 ~ 8838612 (-) True G86852
TU128509 lncRNA upstream 158832 8840814 ~ 8841155 (-) True G86853
TU128510 lncRNA upstream 161405 8843387 ~ 8843774 (-) True G86854
TU128514 lncRNA upstream 170963 8852945 ~ 8853257 (-) True G86856
XM_043254240.1 mRNA downstream 29513 8637411 ~ 8638883 (-) True LOC122355697
XM_043254241.1 mRNA downstream 31484 8634892 ~ 8636912 (-) True LOC122355698
XM_043254454.1 mRNA downstream 55935 8611249 ~ 8612461 (-) True cby1
XM_043254453.1 mRNA downstream 57172 8606637 ~ 8611224 (-) True slc16a8
XM_043254384.1 mRNA downstream 62258 8602210 ~ 8606138 (-) True pdap1a
XM_043254276.1 mRNA upstream 461 8682443 ~ 8687548 (-) False plbd1b
XM_043254277.1 mRNA upstream 461 8682443 ~ 8687548 (-) False plbd1b
XM_043254275.1 mRNA upstream 461 8682443 ~ 8687548 (-) True plbd1b
XM_043254475.1 mRNA upstream 16511 8698493 ~ 8705084 (-) False l3mbtl2
XM_043254474.1 mRNA upstream 16511 8698493 ~ 8704989 (-) True l3mbtl2
TU128398 other downstream 55951 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 149287 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 150031 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 308416 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1279486 7388236 ~ 7388910 (-) True G86203
XR_006252240.1 other upstream 1070 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 5516 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 193635 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 799577 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 799648 9481630 ~ 9489290 (-) False ormdl3

Expression Profile