RNA id: XM_043254262.1


Basic Information

Item Value
RNA id XM_043254262.1
length 1692
RNA type mRNA
GC content 0.44
exon number 8
gene id ldb3b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11375795 ~ 11392390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTATTCTTAGGCTGTCTGTCCAGGCCATCCGAGCAGGCAAGAACTCTCCTCCTTctgcttttaaaacttttttgacttattttgtCAGTGTAAACAGGGGTGGGATTGAactgtttgtttgggttttttttttatctgatcaTTCTGTGAGGCTCCTCGGTGCCTGCCTGTACCCGGGTGTTTGGTCATCCCGACAACAGGGAGAagaaaattaaaggaaaaaGAGGACTTTACTGATCCAAGAAGAAGCTTTTCACTTAAACTTAAACTCTCTTCAAAATGAGCAATTACACAGTAACCCTGTCTGGACCTGCACCATGGGGCTTCAGGCTGCAAGGAGGCAAAGACTTCAACATGCCCCTGACCATCTCCCGGATCACACCAGGCAGCAAGGCAGCAAGTGGAAACCTCAATCAGGGTGACATAATTACAGCAATCGATGGGGTCAGCACTGAGGGCATGACCCATCTGGATGCCCAAAACAAGATAAAGGCAGCCATCACCAAACTCAATCTCACCATGCAGAGGTCGAGACGTCCCGCTCCTGTACCCACAGCCACTCCAAGAATGGACTCACCCATGCCAATTATCCCTCACCAGAAGGAAACCACAGACACTGAGGAAGGAGAAGATGAAGAAAAACCTGTCAAAAAATATGGTATCCTCCTGGCAAAAAAACCTTCCAAAAAATCTCTAATTCCAAACACTGAGGAGAAACCTCAGGAGAATCTCCAACCTGTAATTCATTCTCCTGCTAAAAGCCCTGTCCCTACGTATTTGCCATTTGGGCAAGGGCCAAAAACGACCCCGGACCAGAGGGGACAGTATAATTCTCCCATAGGCCTGTATTCAGCAGAAACTTTAAAGGAAATGGTCATGCAACAAGACAGTTTAAATGGTCTTCCACTGCTGGGCTCACTTCCCATTAAAGACCCTCTTGTGGACAGTGCTTCTCCAGTCTACCAGGCTGTGATCAAACCTGACAATAAGGAGATGGAGATGTCAGAGTGGGCCCGTCGTGCCGCCAACCTGCAGTCAAAGTCCTTCCGCATCCTTGCTCATATCACAGGAACGGAGTATTTGCAAGATCCAGATGAGGAGGCTCTTAGAAAATCAAGGGAGAAGTTTGAATCAGAGGTAAAAGGCCCACGATTTGCCAAACTGAAAAACTGGCACCACGGCCTGTCTGCACAGATCCTTAACATCCAGGGGTAAATGCAAACCAGTGTTACTGGAGAGAAGTTGAGGCAACGGTCAACATGGAAACCCGTAGGCGATGTAAAGTGAGGGTGCAAAAGGCAGATAGGAGTAGTGTAGTGACTGGAATGTGAGTTAGAGTTCTAAACTAGACTGTAAGCGAACACACGAAGCTCCTGTGTTTGATGTTCATGTGtctttttgtttcatgtaaCTTTCAGCCACTGAAACATAGTGCATAGTGCTCAGTTTgtcgttttctttttcattttatgtttctctttttcttctcttttggCTGCTCTTGTTTATCctaaattatttctgaataatGAATTGCCTGAATGATTTACTGATGTAAAGAACTATCCCTGagagaaatgataaaatatatgtacCACATCCACTGCAGTACACCACAGCACATATTGAAATACAAACCAAATGTACTATTGttaatgtgaataaaacattattacttttaaccaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129367 lncRNA downstream 56874 11316383 ~ 11318921 (-) True G87414
TU129370 lncRNA downstream 59797 11312472 ~ 11315998 (-) True G87417
TU129457 lncRNA downstream 92209 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA downstream 92209 11278324 ~ 11283586 (-) False G87484
TU129455 lncRNA downstream 102493 11271741 ~ 11273302 (-) True G87482
TU129509 lncRNA upstream 186798 11579188 ~ 11580353 (-) False LOC122355534
XR_006252227.1 lncRNA upstream 186831 11579221 ~ 11580359 (-) True LOC122355534
TU129560 lncRNA upstream 360659 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 406615 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 407202 11799592 ~ 11800481 (-) True G87552
XM_043253747.1 mRNA downstream 989 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA downstream 989 11344459 ~ 11374806 (-) True bmpr1ab
XM_043254472.1 mRNA downstream 44002 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA downstream 44009 11324401 ~ 11331786 (-) False sncgb
XM_043253246.1 mRNA downstream 156243 11217292 ~ 11219552 (-) True six2b
XM_043253225.1 mRNA upstream 1867 11394257 ~ 11420206 (-) False opn4b
XM_043253224.1 mRNA upstream 1867 11394257 ~ 11420206 (-) True opn4b
XM_043254125.1 mRNA upstream 48379 11440769 ~ 11528254 (-) False usp54b
XM_043254120.1 mRNA upstream 48379 11440769 ~ 11528254 (-) False usp54b
XM_043254119.1 mRNA upstream 48379 11440769 ~ 11528254 (-) False usp54b
TU129464 other downstream 53192 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 329913 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1886483 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1886483 9484946 ~ 9489312 (-) False ormdl3
TU128627 other downstream 1886505 9481630 ~ 9489290 (-) False ormdl3
TU129586 other upstream 440489 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 556881 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1256993 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1278235 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 1359514 12751904 ~ 12752678 (-) True G87845

Expression Profile