RNA id: XM_043254278.1


Basic Information

Item Value
RNA id XM_043254278.1
length 5212
RNA type mRNA
GC content 0.43
exon number 19
gene id usp42
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7778296 ~ 7789396 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtatataatacaaaaaaaaacacttagtatgatttcattacattttaaatttaattattaatgcatttcagTGCTATATCACCACTAAAATACCTTTTGTAGCCTTATCAGTGACCATAGCATTTGAACTATTTATGATAATGACGAATTATATAACACTGAAGCCGcacaatttaaactttaaattataaataacaatgagatttacataaaaaaaagaatgttcatGGTGGATGCTGAGATTCCATAACCTACCGTACGATCCACCAATACCCATTACCAACTTTAAAACGccttttacagtaataaaaatgtgtacgaAACACTACTCCTCTGAATTTATCCACGAGAACGATTTAAATCGTTAGAGTAAAAACGATTCTTTCTTGGTCGACGAGTTGACAGCAACAAAGACGTTTAACTGCCTTGACGGCCGCGTTCAATAAGGCCACATCCACACAACACTGGGTTGGCTGACATTACGAAAGTACCCGGATGGATCCGTGGGAAACTACGTCATTGTTCACCGCCGGACGCTCTTTGGATTTTAGAATGGATGaactcatttaaattaatcataaatTCACAGaaaatgaataatgacCATAGTTGACAAACCTCCAGAGAAACCTGACCTGGAGTCAGTGCGGTGCAAGCACTCCAGCTCCCTGACACCTTTCTCCTCCAGAGACATGGAGAGCAGTAGTTCGAGCTGGAGTGTTGGCCCTTCTGCCACTGAGCTTTCAAGGGCCAAGACTGCCTGTATGGCCCCGACCATTGGAGTGACTGTAAATGGTAGTAATAACACAGCGCTTCAAGTCGAAAGACCCAGAGAGCAAGTGGTCATGACCAGTGAGGATGGCATTGCTCTTCCTCAGAAAGTCCTGTTTTCCCCAGACCGGCTTTGCTTGAAATGGAACCAGGGCCACCGCGTTGGAGCAGGTCTCCATAACCTGGGCAACACATGTTTCTTGAACTCTACCCTGCAGTGTCTGACTTACACGGCTCCCCTTGCCAACTACATGCTGACTAGAGAGCATTCCAAAACATGTCACGAGCCTGGGTTTTGCATGATGTGTACCATGCAAAATCACATCATCCAAGTGTTCGCCAACTCTGGAAATGTCATTAAGCCTATCGGTGTGCTTAATGAGCTAAAACGGATTGGAAAGCATTTTAGATTTGGAAGTCAAGAAGATGCCCATGAGTTCTTGAGGTACACAGTGGATGCTATGCAAAAGTCCTGCCTGCCTGGAAATAAATTGGACAGGCAAACTCAGGCAACCACTTTTGTACATCAGATATTTGGGGGTTATCTGAGATCTAGAGtcaAATGTCTCAATTGCAAAGCAGTCTCGGATACTTTTGACCCATACCTGGATATTTCACTGGAAATAAAGACGGCTCAGACACTCAGTAAGGCTTTTGAGCAATTTGTCAAGCCTGAGCAACTTGATGGGGACAATGCTTATAAATGCTCCAAATGTAAGAAAATGGTAACTGCTTCAAAGAGATTCACCCTTCATCGCAGTTCTAATGTTCTCACCGTCTCACTGAAGCGGTTTACCAACTTCAATGGAGGAAAAATTACAAAGGATGTGAGATACACAGAGTATCTTGATCTGCGCCCATTCATGTCTCAGTCTCATGGGGATCCACAAATCTATGCTCTATATGCAGTGCTGGTTCATTCTGGCTTCAGTTGCCATGCTGGACACTATTACTGTTACATTAAGGCTAGCAATGGGCAGTGGTATCAGATGAACGACTCATCAGTATCTCTCAGCGACATAAGAACAGTGCTTAATCAGCAAGCTTATTTGCTGTTCTACATCAGgtCACCTGATGCGAAAAATGGTAGTGATTTTAGCCAGATGAATCATACTCCAGGCCAGTCATCTCCTCGACCATCCATTCCAGTCAAGATGAATGGGCCTCAGTACACCTCCACATCCTTCATTGGCCCTCAGCTGCCACCCCATATGCTAAAGAACTCTTCATACATAAATGGGAATGGCTCTTCAAAGGAATACCATGGTGGCTCCAAACCCAATAGAAGTTTCTGTGGTGTGACCAAATTAAGCTCTAGCCTATCTCATACGTCCTCTTCTGCATCCGCATCCTCTTCTGCTTCACTTGTTCGGCCAATGGGCATTCCTGACTCATCCAAGAGGCCGAAGTTAACTTTTATTATTGGTCAGAACAAGCCTGTGAGACCTACTCAGACCCAGTCAAGCCCTAACTGCTCTTTATCTTCAGCCTCTCATCCTCAGCCCACATCTTCCAGCACCTCAGTGTCTACCTCAGGCTTCTCACAGGTCAATGGAACTCACACTGGAGCTTCATTCCTGGTTCCTTATGGTCAGGAATCATCTGAGGAATCCGACCAAGAGGCTGGAACCTTGGAGAATGGATCAGTTAAGCCTTATCTTGCTCCCAAGATAACCAATGGGAATGGGGTAAAGGACGACACCCAGTCCCACAATTCCAGTTCACTGCCTCAGCCTACGCCGAAGACAAATGGATCTAATGGCTTTTCAGAGTTACATGTGCATGAAAATGGATCAGGACCTGCCCACAAATCCCAGAATGGCTTTCCCAAAGCCAATGGTTTTAACCATACCGATAAGattgtgGGTGTGCCACATTCTTCATCACAGATTGCTAGTCAATCTAATAGTTCAGACATGCAATTCATCTTAAAGCCTGGAAACAGTGAGTCAAGCAGCTCCAAACCACCAAGTACTGATGGCCAGCCATGTTTCTCACCTTCAAGAAAAAGGATGAACTCTTCTTCAGACTCTTCATCTCAGTCTGATTCACAGGTGCAGTCTGCATCTTTGTCTGATGCATCAAAGACTACGGACACTGACCTTCATGCCCAGACAGCTTCAAGAAATGAGCCGATTCAGGGCCATGACACCCATGCGGAGGCTGACTTGTCAGAACTTCAGGGCAACAACAGTGTCGGCCTACATGTTGCTGATGGTCACACAAGTCCCCACAGGTTAAAAGAAGACTTCAGGTGCAGTGAAGGAGGAAGTAAAGAGTCAAAGCCATCACACTTAGACAAGTTTAGCTCTGGAGATGGACGTAGCGAAGACCGGAATAGGGTTTTAGAGCGGCCACACTTTTCTTCAACTGTGAAAGACAGGGACCGGTATAGACACTATAGGGAATACAGAGAAAGAAGTCGAAGCCGCTATGGTCATAGCTATCGAGAGAGTCGTCCCTTTAGAGAGCGTTCCACCAGTAGAGACCGGCATCACAGAGATCACTGGGACAGATTCTCACATCACCGTAGAGAGCACCACCATTCCCAAAGAAGACCCAGAGAGGAACGCGACCGGAGTAGAGATAGGAGATTTGGGACTGACTCTTATCGTCCTTCTGGACACCATAACCGGGATGGATATTCTAGTCACAGCCATCGTGGGGTGGATGGTGGCTATGGAAGGATGTCCCATACAGTGAATGGGTCAAAAATAAGACCCTCTTCTCCACATTCTGTTAGCCCACTGCCACATTACAAGCGGAAACGCAGTCCATCGGCTGATGCAAGACAAAGCTCTGATGAGTGCAGagcaaagaaatacaaaaagaaaaagagaaacaaagaaaagcacAGGCACTCAGAGAAGGATCAGTCCGAGGGCAATGAGGATAGCAGCTccaagaaacacaaaaagaagaagaaaaagaaaaagaagaggaggGAGGATGAGGAGAGGCCTCATACCAGGAGAGACGTCACTCCGAGGCGGGAAGAGCGTGATTCCAGTGATAGAAATGGTGCAGAGAAAGGAAGTCTGCACCAAAGCTCTGAGTCTCCTCACAATGTTCACGGAGACCATATGGAGGACCAGCAACCGTTCAATGGACACAAAGctaaCGGCCTAAGCGGTTACAGTGGAAGTAAACTTGATCATACTGGGATGGAAAaagacaaatacaaatattttgatcACTCTACCACTGTCAACGGCACAAAGACGCTCTCGAATGGAAATGGAGATGTGGACGGTGCAAGTCACAGGACCCTTTCAGATGGTGAAAACACCGCACATCCTCACTAAAGGGAAGGTGATTTGTTGATCACACCTAAGACTCTGAAAACCACCCATGCAAgcatgtgaaaaacaaaatctacagCTACAGTTCCTGACATGGTGCTTAACATTTAgaacatactgtatttttaccaCGAGATGAATTTTAAAGtttcattattttgtctttttcgtttttcttttatttttaagactaTGGATTTTTTAGTACACTGTACATAAATGAACTTTgatcatggaaaaaaaaaattctatataaagTTAATATATGCGATTAAAACAAAAGCCTGGAGCTTAACATCAGAATTGCTGCTCAGACATACAGACTCAGGATTTTCTCACTTGTGAAGATGAGACAAGCGCTCCCTTTAAGGAATCGAACCTGGGAACGACAAGAACATTTATATATGCTGCATCGGCGGAGAAAGACTGCTTGTCTCTTGGCTTCAAGTTATGATGTCACCATTTTCACATATCGGTTGAGAGAACCGTTTCAAAGGAGCAGCCTTTGCTAATGCTACATGTGCACTTACATCACAGTTAACCTGGACACACTTGAGGACATAAGATGTTTGCTTTGCTGTCTCTTgtacctctcttttttttttagcatctcACTGTATTACTCTGAAATTCCTCAATCAAATCTATCTAGAATGCAAGTtcattgcatcttttttttttttttttttttaattctcactGTTTAGTTTCTTTGAATCCGTTTTGATTTTTAGTTAAGACAATACTGTGAATTTAAGTTGAACTGTACTATCAGTTGTTTGTTTTCGGTCCTGTATCAGGAGTTCAATAGAGACACTTTCTGTAAAGCCACTCGTAATGTAGACCATGTTCTCTGAACATTTgtcgactttttttttttttcttcttcagcgAAATGAAACAGACATGAAAATGGTTATATTCAACTTCATTTTACTGTAGCATGTCAAAGtaaatgtatacagtgtacAATATGTTGAGTGAGAGGAAACGGCCTTAATGtctgaaattgtaatattttctctCACTATGTTTACAACATTTTGTTGGAGTGAATGAACATGTATGTGATGATGGGAAGTGTTTGGTTTTGTAAAGGGTGGGGTTTCCTTTTTACATATAAAGAACGACTTGTGaga

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127784 lncRNA downstream 70102 7707860 ~ 7708194 (-) True G86357
TU127783 lncRNA downstream 72813 7705221 ~ 7705483 (-) True G86356
TU127781 lncRNA downstream 79282 7698665 ~ 7699014 (-) True G86354
TU127756 lncRNA downstream 142152 7634638 ~ 7636144 (-) True G86333
TU127757 lncRNA downstream 143740 7631396 ~ 7634556 (-) True G86334
TU127809 lncRNA upstream 57085 7846481 ~ 7846832 (-) True G86375
TU127862 lncRNA upstream 98570 7887966 ~ 7888246 (-) True G86412
TU127863 lncRNA upstream 100907 7890303 ~ 7891221 (-) True G86413
TU127922 lncRNA upstream 265372 8054768 ~ 8055031 (-) True G86458
TU128016 lncRNA upstream 321797 8111193 ~ 8112713 (-) True G86516
XM_043253460.1 mRNA downstream 17779 7754857 ~ 7760517 (-) False minpp1b
XM_043253458.1 mRNA downstream 19652 7754857 ~ 7758644 (-) True minpp1b
XM_043253457.1 mRNA downstream 23565 7747592 ~ 7754731 (-) True papss2b
XM_043253670.1 mRNA downstream 43051 7720387 ~ 7735245 (-) False ptenb
XM_043253669.1 mRNA downstream 43051 7720387 ~ 7735245 (-) True ptenb
XM_043254282.1 mRNA upstream 191 7789587 ~ 7795766 (-) True eif2ak1
XM_043254283.1 mRNA upstream 191 7789587 ~ 7795323 (-) False eif2ak1
XM_043253019.1 mRNA upstream 18266 7807662 ~ 7815339 (-) False dlgap5
XM_043253018.1 mRNA upstream 18266 7807662 ~ 7815339 (-) True dlgap5
XM_043254481.1 mRNA upstream 26619 7816015 ~ 7824303 (-) True ccz1
TU127575 other downstream 389386 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 674078 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1107049 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1704864 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1723943 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 558766 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 728839 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 729584 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 821156 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 893656 8683052 ~ 8687548 (-) False plbd1b

Expression Profile