RNA id: XM_043254291.1


Basic Information

Item Value
RNA id XM_043254291.1
length 2442
RNA type mRNA
GC content 0.46
exon number 10
gene id tap2t
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11607024 ~ 11612294 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCACACACTGTAGAAGtatgagggaaaaaaactgtttagTGCACGCTGTCTCGTTTTAAGTAAGCTGTGAGGCTATCAAACGCATTTTCCAAATCGAGTCTTATTAacgcaaaatgaaaatgaaaaactgtttcGACGCCGCCCACAAGTGAAAGTGAAACCAAAAGTGATCTTGCCACAAACTGCAACGAGAGCAGCTAATGGTGAGAAGACTCATATCGTTTAtctgtttgtgttgtttatcgcttgtttgctttatttatacgCGCTAGATGCTGCTGAAAACACTGTAAACCAAACATTGTAAAGTCTGTTTGCTAGGTTGTAGGTTAGCGTTTTCAGTGGGTCACGCTAAGACACCAGCTTGCCCGTTAGCTaaaacccctctaaaaccagCTAAAAGACTAGCGTGAGCAGGCTTAGAAAAACATTCTCGTGGTTTATCTGATTCATTCTCAGTTTTAAGATGTCCTCCAAGGCTCACTCCATTTATAGCACTGCAGCGGTGCATTTCTGCCTGTTGTGCTGTGATCTTGTCATCTGGGCTTGTGTGTGGGCTACACTTCTGTGGATGCGTGGAGAGGGCAGTCTGGATCTACGGTGCCTTTGGACCCTCAGGGTCATCAGCTGCGTTGTGCTTTATTCACTGAGCACAATCTTAACGGACGCCAGCTTTCAGCCTCTCCTGAAGCGATGGATAGTCCTACTGAGCTTCCTACCTCCAGTGTTTGACAGTATGCAGACAATGCTGCATGGGACCGTGAGAGGCTTTAGTCCTGTTCCTGATCCTGGCATGGTGTTTCTGAGCTCTGCTACATCTACtatcatatatattatgtggGAGATGGCCTTCCCGCATGGTGCATCATCTAAGGGTGCCAGAAAccagaagaaagaagaagaggcCAAAGCACTTCTAATGAGGGTCATTCGCTACTCCAGGCCTGATTATCTTCATCTAGGGGCGGCCTTCTTCTTCCTCAGCCTGGCAGCGCTGTttgAGACATTCATACCACACTGCATTGGCAAAATTATTGACATATTAAGTGGAAAGTACCAGCACACCCATTTCTTATGGGCTATTGGACTCATGGCTTTGTGCTCACTTGGAAGCTCTATGTTTAGTGGTATGCGTGGCGGGATGTTCATGTGTAGCCTCAGTAGACTCAACAAGAGAATACGATACATGCTGTTCGAGAATCTCATGAAGCAGGAGATAAGCTTCtttgaagaaaacaaaccaGGTAGTCTAACATCACGATTGATCTCTGACACTGATAAAATGGGACGTTCTGTGGCCATGAATGTGAATGTGTTACTGCGGAGTTTGGTGAAGACATGTGGCATGCTGTTCTTTATGTTGCGCCTATCCTGGCAGTTAACCCTTCTTACATGCATTGAAATGCCACTTCTTGCTTTCATACAGAACTCATACAACAACATCTACCAGAAAACGGCCAAAGAGCTCCAGGACTGCGATGCAGAGACTGCAGAGTTGGCATCTTCTGTTATTGGGTCGATGAGGACTGTGCGCAGTTTTAAGGCGGAGCATCAAGAGCTACAGCGTTATGAACACACTCTCAACAGGAAGCTGCAGGTTTTGAGGCGCAAAGGCATCTACAGTGCCATCCATCTTTTAATACGCAGGTTTGTTACAGTCAGCTTGAAGGTAGCTATGCTTTTCCAAGGCCGGAATCTCATCTCATCTGGACAGCTTAGCAGCGGCAGCCTCCTTGCGTTTGTGTTCTATCAGAAGGACATGGTGACCAACATGAAGCATCTGGTATACATTTATGGAGACATGCTGAATACTGTGGGATCTGCAGTCAAGGTCTTCCAGCTGCTTGACAGGAAGCCACAGATGAGAGAGGAAGGAGATTTGGCCCCAGAGAAGCTTGAGGGAAGACTAACCTTTGAAAAGGTCACCTTTTCATACCACTCCCGCCCTAACGAAAAAGCACTTAAGTCTGTTACACTGACCTTGAGTCCAGGGAAGCTGACGGCATTGGTAGGACCTTCTGGTGGTGGGAAGACCTCTTGCGTCTGCTTGCTACAGAGGTTCTATGAACCAAAGGAGGGTGAGGTTTTACTGGATGGAGAACCTCTGCACCACTATCAACACCAATACTTGCATGAAAAGGTAGCAATGGTATCCCAAGATCCTGTGCTTTTTTCTGGCTCTGTGAGGTATAATATTGAATACGGTTTGAAAGACTGCACACTTGAAAGAGTAGAAGAAGCTGCTCGGAAAGCCAACGCTCACAACTTCATATGCAATTTGGAACAAGGATATGACACAGTAGGTTAAACCTGGATGCTTTCTCTGCAGATGTTGGCGAGTGTGGTGGCCAGCTGTCTGCAGGGCAGAAGCAATGCATTGCAATAGCCAGAGCTCTGATAAGGAACCCACAGATTCTTATCTTGGACGAGGCCACCAGCCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252227.1 lncRNA downstream 27371 11579221 ~ 11580359 (-) True LOC122355534
TU129509 lncRNA downstream 27377 11579188 ~ 11580353 (-) False LOC122355534
TU129367 lncRNA downstream 288809 11316383 ~ 11318921 (-) True G87414
TU129370 lncRNA downstream 291732 11312472 ~ 11315998 (-) True G87417
TU129458 lncRNA downstream 324144 11278324 ~ 11283586 (-) False G87484
TU129560 lncRNA upstream 140755 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 186711 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 187298 11799592 ~ 11800481 (-) True G87552
TU129616 lncRNA upstream 278640 11890934 ~ 11894512 (-) True G87593
TU129629 lncRNA upstream 324747 11937041 ~ 11937682 (-) True G87603
XM_043254023.1 mRNA downstream 6249 11583162 ~ 11601481 (-) True acsf2
XM_043253908.1 mRNA downstream 57305 11536670 ~ 11550425 (-) True synpo2lb
XM_043253909.1 mRNA downstream 72777 11529051 ~ 11534953 (-) True myoz1b
XM_043253910.1 mRNA downstream 72778 11529051 ~ 11534952 (-) False myoz1b
XM_043254124.1 mRNA downstream 128133 11440769 ~ 11479597 (-) False usp54b
XM_043254035.1 mRNA upstream 448 11612742 ~ 11621002 (-) True slc16a5a
XM_043254075.1 mRNA upstream 11804 11624098 ~ 11629888 (-) True kctd2
XM_043253148.1 mRNA upstream 18030 11630324 ~ 11633883 (-) True hexdc
XM_043253554.1 mRNA upstream 73495 11685789 ~ 11741961 (-) False zeb1b
XM_043253556.1 mRNA upstream 73495 11685789 ~ 11740556 (-) True zeb1b
TU129464 other downstream 285127 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 561848 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 2118418 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 2118418 9484946 ~ 9489312 (-) False ormdl3
TU128627 other downstream 2118440 9481630 ~ 9489290 (-) False ormdl3
TU129586 other upstream 220585 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 336977 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1037089 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1058331 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 1139610 12751904 ~ 12752678 (-) True G87845

Expression Profile