RNA id: XM_043254295.1


Basic Information

Item Value
RNA id XM_043254295.1
length 2576
RNA type mRNA
GC content 0.49
exon number 8
gene id raraa
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 3766347 ~ 3881783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCTCACACTCTGAGCAGGTCCGAGGGCTCGAACACACGGTAACCGCGCGGATTAataacacgcgcacacacaagCCCGTTAAACGCGCATTTGTGTGCTGTTTATAATCGGGAGGACGCTAAACACCCAAAAAGGATACTGTTTAATATAGCTGCACGAGTTTTATGGTATCACGGAGACACAAACGAGACAAAATAATCACATCACTAAATCGGAGCTTCGCAAATAATATTGGACCAAACTCACCGCTCAACACTGGACGTTTGATGGATTTACTGATGCCTCGTTCTTTCTGTATAGTGTTATTGCATTAGCCGATCGAGATTTGGAGTAAATACCGTATATATGGTCTAAAACATATACTCTTGCACTTTTGAGACACTGTTGGTCCcgtatgtgaatatatttttgcaagAAGTGTTTCAGCGGACGTCGATTGGACTGATCTCTGACCATGCACAAGGGCTTCGGCTTTAGTTTTACTCGCTTCTGTAGTTCCTGATCTCTTCTGGGAATAGCTGGGATGTCTGGGATGGATCCATCTCTGTGTTAAAGCTCTATGCGAAGTGTACGGTCGTGGATCAGCTGTTGCCTTGAGGAATCGAGTCCGACCTGATCATGTACGAGAGCGTGGATGTGAACCCTTTCCTCATGATGGATTACTATAATCAGAGCAGAGGATGTCTGATCCCGGACAAGATGCCCCATCCCTTCAGCTCATCCATCAGACATCAGCACTGGAGCGGATCCAACCACTcaaTCGAGACCCAGAGTACGAGCTCAGAGGAGATTGTCCCGAGCCCACCGTCTCCGCCTCCTCCTCCCCGCGTCTACAAGCCCTGCTTTGTGTGTCAGGACAAATCTTCAGGGTACCACTATGGCGTCAGTGCCTGTGAGGGCTGCAAGGGCTTCTTCAGGCGGAGTATCCAGAAGAACATGGTCTACACGTGCCACAGAGAGAAGAACTGCATCATCAACAAAGTCACCCGCAACCGCTGTCAATACTGCCGGCTGCAGAAGTGCCTGGAAGTGGGGATGTCCAAAGAATCGGTGAGGAATGACaggaataagaaaaagaaagaagagaaaaagccCGAATGCACAGAAAACTACACGCTGAGCCCAGACACAGAGCAGATGATTGACAGAGTCAGGAAAGCCCACCAAGAGACCTTCCCCTCGCTGTGTCAACTCGGCAAATACACCACGAGTAACAGCTCGGAGCGGCGCGTCTCACTGGACGTGGATCTGTGGGACAAGTTCAGCGAGCTCTCGACCAAGTGCATCATAAAGACGGTGGAGTTCGCCAAGCAGCTGCCAGGATTCACCACCCTCACCATCGCAGACCAGATCACACTGCTGAAGGCCGCTTGCCTCGACATACTGattctGAGGATCTGTACCCGCTACACACCTGAGCAAGACACCATGACGTTCTCTGATGGGTTAACGCTGAACCGAACGCAGATGCACAACGCCGGCTTCGGCCCGTTAACAGACCTGGTGTTTGCCTTCGCCAATCAGCTACTACCGCTAGAGATGGATGACGCAGAGACAGGGCTGCTCAGTGCTATTTGTCTGCTCTGTGGAGATCGGCAGGACCTGGAGGAAGCTGATAAAGTGGACATACTGCAGGAACCGCTGCTGGAAGCACTGAAGATCTACGTGAGGAACAGGAGGCCACACAAACCTCACATGTTCCCGAAGATGCTGATGAAAATTACCGACCTGAGGAGCATCAGCGCCAAGGGGGCAGAGCGTGTGATTACCCTGAAGATGGAGATTCCCGGCTCCATGCCTCCTCTCATCCAGGAGATGTTGGAGAACTCTGAGGGTTTGGAGAGCTCTTCAGGCGGGATCAGTTCACGGGCCTCCGGCGCTCCTCCAGGCAGCTGTAGCCCCTCCCTTTCGCCAAGCTCCGCCCAGAGCAGCCCACCCACACAGTCGCCATGACGCTCATCGGTGCTGCCCTCAGTAGCCACTTACCGACTACTGTGTGCCCTCCCCGACATGACAGCGGACATGTTCAAAAGCACGCGCTCATCTGCCGTGTTCCTCAGAGACTAAGGGGGGGGGTCAAAGGTGTGTCGCCggaattttgttgttttctttcctcAGATCAGACTGTGATTGTATTCCTCCTCGATTTCGCCACTCCGAAGGGAGGAAGACCGCTGGAGGGCGAAGACAAAACGCGCAAAATTTATGGACAAACGTGTAGAAGGAATCAAAGACTTTTCTTCTGTTTCGATTCTCATGGCTTGGGCTTCTGTTTCAAATGACCAGAGACTGATTTCCtacaaactaaatatatatatatataaatatatagagaggaaaaaaaacgtgGAATGTCTGTGATTGAGAACAGAATGCAATGCGGACTTGATGTAAAGATGCAAATGAATttcctcattttctttctctttacgCCTGTGAATAGGCAGAGAgtgaattgttttatttcagactgatgatgatgtttttcatggagaagaaaaaaaacattgaaaggACTATTAATTTCCACTCACAAAATTGTGCACAGAAGATATAAAAATGTCGCAACAAACA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0001889 liver development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0032526 response to retinoic acid biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08527 RARA, NR1B1; retinoic acid receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126516 lncRNA downstream 45324 3615842 ~ 3721023 (-) True G85389
TU126494 lncRNA downstream 391396 3373377 ~ 3374951 (-) False G85372
TU126495 lncRNA downstream 391396 3373377 ~ 3374951 (-) False G85372
TU126496 lncRNA downstream 391396 3373377 ~ 3374951 (-) True G85372
TU126466 lncRNA downstream 606604 3156816 ~ 3159743 (-) True G85355
TU126574 lncRNA upstream 164020 3960763 ~ 3961353 (-) True G85435
TU126648 lncRNA upstream 321062 4117805 ~ 4175223 (-) True G85487
TU126689 lncRNA upstream 379247 4175990 ~ 4176266 (-) True G85511
TU126694 lncRNA upstream 386839 4183582 ~ 4188337 (-) True G85515
TU126717 lncRNA upstream 424547 4221290 ~ 4221493 (-) False kcnh6b
XM_043253915.1 mRNA downstream 1896 3753578 ~ 3764451 (-) True vps35l
XM_043254485.1 mRNA downstream 35898 3725084 ~ 3730449 (-) True c12h10orf88
XM_043254328.1 mRNA downstream 226192 3497872 ~ 3540155 (-) True LOC122355770
XM_043254327.1 mRNA downstream 368812 3393655 ~ 3397535 (-) True LOC122355769
XM_043254261.1 mRNA downstream 663032 3089629 ~ 3103315 (-) True LOC122355711
XM_043254134.1 mRNA upstream 120677 3917420 ~ 3931659 (-) True top2a
XM_043253248.1 mRNA upstream 166572 3963315 ~ 3966302 (-) True csf3a
XM_043253277.1 mRNA upstream 178017 3974760 ~ 3982557 (-) True lrrc3ca
XM_043253704.1 mRNA upstream 291967 4088710 ~ 4107244 (-) True ppp1r9bb
XM_043254366.1 mRNA upstream 342317 4139060 ~ 4153875 (-) False p4ha1a
TU126480 other downstream 466659 3258531 ~ 3299688 (-) False G85366
TU126481 other downstream 466741 3298548 ~ 3299606 (-) False G85366
TU126483 other downstream 466741 3298548 ~ 3299606 (-) True G85366
TU126462 other downstream 673934 3090785 ~ 3092413 (-) False LOC122355711
TU126277 other downstream 984994 2767908 ~ 2781353 (-) True G85232
unassigned_transcript_1808 other upstream 198348 3995091 ~ 3995185 (-) True trnal-uag_4
unassigned_transcript_1809 other upstream 198508 3995251 ~ 3995332 (-) True trnal-aag_33
unassigned_transcript_1810 other upstream 200008 3996751 ~ 3996830 (-) True trnal-uag_5
unassigned_transcript_1811 other upstream 201283 3998026 ~ 3998107 (-) True trnal-uag_6
unassigned_transcript_1812 other upstream 201451 3998194 ~ 3998274 (-) True trnal-aag_34

Expression Profile