RNA id: XM_043254296.1


Basic Information

Item Value
RNA id XM_043254296.1
length 3827
RNA type mRNA
GC content 0.48
exon number 21
gene id nbr1a
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11936841 ~ 11945635 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGAACCTAGCGATGTAAACAAGAACGCAAAAGACAAGTCTGACAGTGTTGCCACCACCACGGGCTTTTAGAGCGTCACATCCCCGCATCAAACGCATTAGTTGACTCTGGCTAACAGCCATGAACCTCCCCGTCACTGTCAAAGTGAACTTTAGGGGCAACGTGAAGAAATTTCCAGTCTTGGACACGAACAAAGCACAGTGGGAGACTGTGGAGGCCTGGATTAAAACTACATTCGGTTTGAGCCATTTTCAAGTGAAATATTTTGACGAGGAAAACGAGGagGTGTGCATAAACAGTCAAGatgaATATACAGAAGCTTTAAAGagtGCATTTAAACAGGCCAACCAGCTACACATGAATGTCTATAAGATGAAGGGTCAGGCAGAGGGTGGTGCAGTGAAGGCAGAACTAAAGATAGATCCTAGACCGGCTCCACCGTATCGAGCAAGGGTCAAGATGGCAGACAAGGAGACCCAGGTGACCCCCGAGCGGGACTCTGCTGTggccaaagaaaacaaagggATGAAAACTGAGGAGGAGGCAGTACCAACATGGTTTAAATCCTACATGGACAGGTTTAAAGATCAAGTGGTAAGGGAGGTGGTGGACAGGATGTGTAGTGAGTTTTCTGGTCAGTGTTGCACACACAGACCCTCGGATCCACCAGCAGAGGAACCAAGCACTTCTGGCACTCAGAAAGCTACAGGCTCCACCACGCTAAGGGCCTCTAGCTCAACTCCAAATTGCAGTAGTTGCAAAGGACCAGCCACTGGAGGAGGATATCAGTGCAGTGTTTGTCCATCTTGTATCCTATGTGAGCCATGTAGTCATAAACACGATCCCAGCCACAACCTAAAAAGAACAAGGACTCCTTTGTCTGTCCCTGAACGTGGAGTTACTCCGGAACCCAGGTTTCTGAGACGGGGTGACAGGACGGTGCGAAAAGCGGAGAGACAGCGGCTAAAAGCTGAGCGGAGGCAGCTGAAGGCCGAGGTGAAGGAGATCAAGAAGAAGCTGAGGCTGGAGAAGAGAGGTCTGCTGTGGAGTGGAGCCTCCAATGGGACCAGCAGCTCGGGCCTTGCCCCCGCTCCCGGCACATCTCTAGGCCCAGGACCAGCCCCAGCTCCGGCCCTGTGCCCAGACCCTCAAACATCCAGTCCAGAGGGTCCCAAGGTCTCCTGCTCCACCTTGGTGCCCACAATGACTGCCTTGTTTCTGGATGAGAATCTACCAGATGGCACTTGTCTGGAGCCAGGCACCAAGTTCATCAAGTACTGGAAGATGAGGAACACTGGCAACATCAACTGGACTTCAGATACCAAGttGAAATTTATGTGGGGCAACCTGACCCTGGGATCACGGGAGCAAAAAGAAGTCGCAGTGCCCTTTCTGCAGCCGGGTCAGGTCGGCGTGGTGAGTGTGGCGTTTGTTGCGCCCCTGCTGGAGGGCACCTACACATCTCACTGGCGCCTGGCGCACTGCGGGGTGCAGTTCGGGCCTAGAGTGTGGTGTAGCATTGTGGTGGTGCCAAATGCTGAGCAGAAATCCACCCACTGCAGCAAATCACTGAGGGCAGATCTTTGTCTAATGAGGAAAAATGGCATATTCTGGTCAGGCACCAGAGATTGTGAAACCTCCACCAGCTCCCGGAGAGAATACTACATCCCCTCAGTGGACTTATTGACGGCACAGGATCTGTTGTCCTTTGAGTTGCTGGATATAAACATTGTGCAAGAATTAGAGAAAGTTCCTGCCAACAGTCCAGCTGATATGACCCCCTGTGTATCTCCACTTCCTCATCAAGGACCCTTGTTTGGAAAGCATGGTACGGGGCTAAGCAAAGTTGAGGCTGGACATTCaggcagaaaaaaaagtcaagCATTGCCGCCTCAGAGACAGAATGAACTTCTGGATGTTCCTGGCAATGAGGAAGGAGATGAAGACATCAGTGGGACCCAGTTTGTGTGCGAGACTGTGATTCGCTCTCTCACTCTTGAGGAGGAGCCCGAGCGTAAACCTCAGCGCAGAACCCGGCCCAACATGAGGAGACATGACGtttatgaTGCTGCTCGCTATCAAGAGAGATCATTACTTGTGAAGAACGACAGACATTTGGCAATCATAAATAGGCCTGAGGCTCCACTCCCTGTGCCCAAGCCTGTTATAACAGAGGAACCCATCATGCCAGTCTTTTCAGAAGCATTAATTGGCTCAAATGAAAACCTCTATACCGACCCAGCTGCACAGGACGAGaatgaagaggaagtggaaccTAAGGAACGtgaaaatgataaagaaaaagaggaagaagCGGGAGAGTGGGATGAGGTGAGCAGCCAGGTGTCCTCTGCCTCATCAGAGGACTACATTGTCATCCTGCCTGACTGCTTCGATACTTCCAGGCCCCTGGGAGAATCGATGTATAGCTCAGCAATGTCCCAGTCTGCAGTTCCTCTTGCCAACGAGCCAGAGGCAACGCAAATCCAGAGTACGGCCGAAGGAGAAAATGAGGAGCCCATACCTGTTCCAGTGCTTCAAAACAGCCTGAACCGGATGCTCTGTACCTCTCAGATATTAAACACTCCTCCTCTAATTCCAGAGATGGTACCTCCACCCATAGCTCTTTCGCCTCCCCCATCTCTTCGAACCCACAgATCAGTGAGATCTCACGACCTTGAGTCAGGACCAGGGGCCTCTGAAGACAACACCGCATGTCAACCTGACGATGACTCAAGTGGTTGCAGATCAGTTCATTTAGAGGCCCCTGTTAGTGCCTTTGAGATCTGCAGCTCCCAGGATCTCAGgGCACGTCACGGTGGTCTGACAGAGGGGCTGGTGAAGGGAGCGCTCTCTGTGGCTGCCTCTGCTTATAAAGCACTCTTTACAGGCCAGAGCACACCTGCACAgCGGCCTGCTGTTGACCCAGCCTGTGAGGATGCCTCCATGATGGCTGTACTGCAGGAGATGGGTTTCAGCAACCAGCCGCTCAATCAAAGGTTGCTGAGGAAGCATCACTACAATTTACTTGATGTGGTCAACGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGAGCAACCTCAATAAAGTGTAAGAATTGTAAATGATTTCATCGTGTTGCAGCATTCTGTCAGAACAGGAGTAGGGTGATGATGAAATTATCTCTGATGTTGTTTTGTTAGAGAAATAGTTTGGACTCTTGAAAAAGAGAACTGTATCGCTATAACTGACCATAGCTGCAATGATGCAATTACTTGATTGTAAAATTTTAGTTTCATGTTTATATAGGACATTAtgaatgggggaaaaaacataAGGTTTATTAGGCAGTCttaattctttctttattcagtgtgtgtgtcctaCTAACACATATAGACTGTTGTTAGCTAGGCTTCAGGTATCTTTTGTACTGCTTGATTAGATAAGACGATACATTTGAGACAATGCCCAGAGgattttggtttgtttgagCACTTTTGCCTCTCAGAGGAAAGACATAAATAGAAAAGCCTGTACTGATTTTGTTATTTGTCATAGTGACCTCTATATTtgtatatcttattttaaatcacaCTAATTCATGTCACACTAAGGTGTTGGGCTGCCAAACTTTTAGGAATGTGCAATGTGTGTTTTAGTCATGCTTAACACAACCAACGATTGATTGGTCAAGAGTTTGCTAGGCACCAATTTCGGACATCTTTGTCATCTTCATGTGCAATGTATTACTATGAAACGAAGGCTTATCAACATGGCTTTTTGTGTCCAACACGGTGAATAAAAGACATTCCGTTATCA

Function

GO: NA

KEGG:

id description
K17987 NBR1; next to BRCA1 gene 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129284 lncRNA upstream 53425 11882685 ~ 11883417 (+) False hoxb6b
TU129264 lncRNA upstream 113520 11822063 ~ 11823322 (+) True G87337
TU129272 lncRNA upstream 133215 11803287 ~ 11803627 (+) True G87343
TU129270 lncRNA upstream 136215 11800356 ~ 11800627 (+) True G87341
TU129252 lncRNA upstream 192437 11741981 ~ 11744405 (+) True G87331
TU129657 lncRNA downstream 51655 11997290 ~ 11997512 (+) True G87617
TU129663 lncRNA downstream 121768 12067403 ~ 12067629 (+) True G87621
TU129688 lncRNA downstream 203788 12149423 ~ 12149637 (+) True G87644
XR_006252169.1 lncRNA downstream 205517 12151152 ~ 12156922 (+) True LOC122355133
XR_006252170.1 lncRNA downstream 205517 12151152 ~ 12156922 (+) False LOC122355133
XM_043254009.1 mRNA upstream 4708 11905082 ~ 11932134 (+) True skap1
XM_043253073.1 mRNA upstream 39272 11879440 ~ 11897570 (+) True hoxb1b
XM_043253075.1 mRNA upstream 49721 11885009 ~ 11887121 (+) True hoxb5b
XM_043253076.1 mRNA upstream 52745 11882151 ~ 11884097 (+) True hoxb6b
XM_043253493.1 mRNA upstream 61163 11873649 ~ 11875679 (+) True hoxb8b
XM_043254302.1 mRNA downstream 436 11946071 ~ 11949632 (+) True tmem106a
XM_043254301.1 mRNA downstream 449 11946084 ~ 11949632 (+) False tmem106a
XM_043254303.1 mRNA downstream 6216 11951851 ~ 11953983 (+) True arl4d
XM_043254304.1 mRNA downstream 26060 11971695 ~ 11981994 (+) True dusp3a
XM_043253098.1 mRNA downstream 43646 11989281 ~ 11993628 (+) True sost
TU129235 other upstream 235187 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 852472 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 1355087 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 1356846 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 1445670 10487620 ~ 10491172 (+) False LOC122355192
TU129954 other downstream 787129 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 814739 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 1496308 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 1650159 13595794 ~ 13596348 (+) True G88082
TU130395 other downstream 1917456 13863091 ~ 13863702 (+) False gucy2g

Expression Profile