RNA id: XM_043254313.1


Basic Information

Item Value
RNA id XM_043254313.1
length 3234
RNA type mRNA
GC content 0.44
exon number 21
gene id hectd2
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7504716 ~ 7521406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAAGGTCACAATAAAAGAAAGCTGACGCAAGAGAACCTGACCCCCTTGAGACCGGAGCTTCTAACATTCACATAAcaaataataagataataaacAACCATAAATAAATCCACTATAGTGGGGGAAAATTATGACAATTTACAAAAACTAAGTTTTTTCCCCTTTGATACCAGTCCAAACAAACTGTGATTTTGATGTTACATACAAATACAGTTTGATGTTACATACAAATACGAAAGATCATAATTAGAGGTGTGCAATAAATCTGACTCAGCAGTGTTACGTCGAGGCAGCGGCCGTATCCAAGTCCGTAACTACAaacctcatcatcatcatcatcatcctcaacAACATGGCGCCAGCGTACAGCTGGACCGTACATAGACGCCACGGCACTTCTTCAACAAGTTACTTTACTCACTAAACGCAGCGTCGCGAAGATTTTTGtaccttttctttttacttttcgTCTTACCCCATTCGTTTGTTCTCTTTGACGAGCGAATATCGGCCTTTTTGGTCTTCTTAGTCTCAAAAACTCACCTGCTTTAGCGAAAAGAACAGACCGTACTGGACTCCCTCACTGTTGCTGTATTTCTCAAAGTAAAAGGAAAGTGAGCGCTGAGATTACGCAGACGgggaaagtatttttttccagaaaaataAGCCATGTAACTGCGCTCGAAAGGCGTTTCTTCAGAGGACATGCATCTAAACATGAGCGAAAATAACTGTCCATTTGAAGAAAGGGATAGAGACAGACTTCCTCCTATACTAAATCATAGCTTGGATCGCGGACCGAAGCTCCCTTTTCCGTCTTATGGAAGCTTCATCTCCACCCTGAATCACAAAAGAGAGACAGGCAGCCACAGTCTTTCTTCTCCGTTCCTGCTACCTGCAGTCAAACAAGtGAGAGAGCTTCCTCCAATATGTCCAGATGTGAGACAGAAGCATCGTATCTCTATTGATGTTCTCCCTCCAGAGGTGAAGGCTCGTTTTCTCTCGGAACCCATTATTCCCATTCGGACCAAAACCGCCAAAGAGTTTCAGGATGATGTTGAAAGGGCAACTATCTCAGGGGATTGGAAACAAGTCCATGATTTCTACTTGACCACTTTTGACTCGTTTTTGGAGCTCAATGGTGCATTTAAGaaagAAGCAAATGCTCCCTTTAACACTATTGAAGACTCAGgaataaacatcaaatttgtCAGTATTGTTTATGATGCTTTACTCCACACGCCTGCGGACACGCAGAAATCAGTCCTGAAGGGAATTATTAATAGCTTATTAAGAGAATGGAAAGGgccTCGCACAAAGGATGACCTTAGAGCGTATTTTGTTCTTGTTCAGAACCCTCAGTACACCAGCCCAGCCACATATGTCATCTATGCACACTTACTGAGGCAAATTGCAGCCCTGGCTGAAGCAGACCACCATTTCCTGATGCACTGGTTTAAAAAGCTGCCTCAGAAGCGTTTCAAACAGCTGGTGGAGCGCTTGCAGCTCTTCATCACTACCCGCCTATTTCCTGCCAAGCCAGAAGAGTTGCCGCCCATGGCCAAATGCTCCTGGTGGATTCCCTCAGCCACTAAAGTCCTTTCCCTGCTTAATGCTGCAAATAGCATTTCCTCTTCCCCTATCATCCCTTTCACTGATTTCTACAACCTAACATTGGACCACATAGACTTTATGGAGGATTACCACACGTGGCAGGCTCACGGAAATTCAAACAGGTTCACCTTTTGTCAGTTCCCCTTCATCTTGTCCACAGTAGTGAAGAAGGCCATCATCCAGAGAGACTCTGAACAGCAGATGATCAGTATGGCCAGGCAAACCCTGGTGGACAAGGTTTCTCGCAGGCAGAGGGTGGATATGAGTCTGCTGTTTCTCAACATTAAAGTTAGGCGTCTGCAGCTGGTCAGTGACTCACTGGATGAGCTTTCGAGAAAGCGAGCAGACctgaagaaaaaactgaaagtgaCGTTTGTTGGGGAAGCGGGGTTGGACATGGGTGGACTCACAAAAGAGTGGTTTCTTCTCCTGATTCGACAGATTTTTCACACAGACTATGGCATGTTCACGTATGTGAAAGAGTCCCAGTGTCATTGGTTCAGCAGCTGGAAATGTGACAACTACTCTGAGTTCCGATTGGTTGGAGCCCTCATGGGCTTGGCTGTGTACAACAGCATCACACTGGACATCCGTTTCCCCCCTTGTGTCTACAAGAAGCTGCTGACTCCGCCCATTGTGCCATGTGACCTCGACACCCCTGTCGGCATGGCGACCCTCACCCTGGACGACCTCCAGCAGATTATGCCTGATCTTGCTCATGGACTCGGGGAACTCCTCAGCTATGAAGGAAACGTTGAAGAAGACTTTTATACCACGTTTCAGGTTTTTCAAGAAGAACTTGGAGTGGTCAAGTCATATAATTTGAAACCAGGAGGTGACAAGATCCCTGTAACCAACCTAAACAGAAAAGAATACGTCCAGCTCTACATTGATTTCCTGCTGAATAAATCCATCTACAGGCAGTTTGCTGCTTTCTATCATGGTTTTCATAGTGTTTGTGCCTCCAATGCCCTGATGCTTCTGAGGCCAGAGGAGGTTGAGATCCTGGTTTGTGGAAGTCCTAATCTGGACATGGGCTCTCTGCAGCGAGTAGTGCAGTATGAGGGCTACAGCAAGACTGACCCCACCATCCGAGCATTTTGGGACGTGGTGCTGGCATTTCCTTTGGAGCTGCAGAAGAAACTGCTCCACTTTACCACAGGAAGTGACCGCGTTCCTGTGGGTGGAATGGCCGACCTCAGCTTCAAAATCTCTAAGATTGAAGTCTCCACTGACTGGCTCCCAGTGTCGCATACATGCTTCAACCAGATCTGTCTACCTCCATACAAGAGCAAGAAAGAACTACGGCAAAAGTTAACCATTGCCATTTCAAATGCAGAGGGCTTCGGATTGGAGTAAATTACAGATGTAGATAATTTAATGTGTGTTCACTGAAAGAATATGGGCTGTGAtagttcatttttttaacaaccaacagggttatttttaaattctagtGCAATTGCTTAATTTGAATTTTGGTAACAAACAAGACGCAAAATTGTTATTTGAAATTGCATGCAAGGAAGTggaattaaaatcaattaaatatttaacaagcTTATTAGTACTGGacaacaattaattgcatccaaaataaaggtttttgtgcacataa

Function

GO: NA

KEGG:

id description
K12232 HECTD2; E3 ubiquitin-protein ligase HECTD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127605 lncRNA downstream 255 7502577 ~ 7504461 (-) True G86230
TU127584 lncRNA downstream 17641 7480055 ~ 7487075 (-) True G86210
TU127590 lncRNA downstream 28586 7469027 ~ 7476130 (-) True G86216
TU127572 lncRNA downstream 118733 7380107 ~ 7385983 (-) True G86201
TU127570 lncRNA downstream 127521 7376898 ~ 7377195 (-) True G86199
TU127609 lncRNA upstream 1258 7522664 ~ 7523001 (-) True G86232
TU127743 lncRNA upstream 66905 7588311 ~ 7590983 (-) True G86324
TU127746 lncRNA upstream 71395 7592801 ~ 7596998 (-) True G86325
TU127752 lncRNA upstream 94462 7615868 ~ 7617213 (-) True G86330
TU127757 lncRNA upstream 109990 7631396 ~ 7634556 (-) True G86334
XM_043254022.1 mRNA downstream 139701 7359383 ~ 7365015 (-) True kcnj19b
XM_043253936.1 mRNA downstream 321882 7174618 ~ 7182834 (-) False acbd4
XM_043253935.1 mRNA downstream 321882 7174618 ~ 7182834 (-) False acbd4
XM_043253933.1 mRNA downstream 321882 7174618 ~ 7182834 (-) False acbd4
XM_043253934.1 mRNA downstream 321882 7174618 ~ 7182834 (-) True acbd4
XM_043254236.1 mRNA upstream 5670 7527076 ~ 7538565 (-) False pcgf5b
XM_043254234.1 mRNA upstream 5670 7527076 ~ 7538563 (-) True pcgf5b
XM_043253178.1 mRNA upstream 30726 7552132 ~ 7554852 (-) True rpp30
XM_043253276.1 mRNA upstream 51765 7573171 ~ 7578201 (-) True LOC122355224
XM_043254351.1 mRNA upstream 83447 7604853 ~ 7608716 (-) True LOC122355798
TU127575 other downstream 115806 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 400498 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 833469 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1431284 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1450363 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 826756 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 996829 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 997574 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 1089146 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 1161646 8683052 ~ 8687548 (-) False plbd1b

Expression Profile