RNA id: XM_043254340.1


Basic Information

Item Value
RNA id XM_043254340.1
length 736
RNA type mRNA
GC content 0.45
exon number 3
gene id snu13b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2474996 ~ 2476396 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGTGTCTCTACCACAAACACGTGTTGTGAGCCGCTGTAGTAGCGAAGATCCCACAGCTTCTCTGGTATACGAAGCGATTTCTTTAGTTTAATTGCTAAACtctatacattttctgtttagttAAGTAGTACTGTCCTCCGTGAAGCTCTTGCCGAGAGGACCCGTGTGTTTGTAAGTCGGTAACAGGCCAAAATACAACAGACATAATGACTGAAGCTGAAGTGAACCCGAAAGCCTATCCTCTGGCAGACGCCACGCTCTCCAAAACCATCTTGGATCTGGTTCAGCAGGCGTCGAACTACAAACAGCTGAGAAAGGGGGCTAATGAAgCCACCAAAACTCTTAACCGTGGGATTTCTGAGTTCATCGTGATGGCTGCCGATGCTGAACCTCTGGAGATCATCCTGCACCTGCCGCTGCTGTGTGAGGATAAGAACGTGCCGTATGTGTTCGTGCGCTCTAAACAAGCTCTGGGACGTGCGTGTGGGGTGTCAAGACCTGTCATCGCCACATCGGTCACCATCAAGGAGGGATCGCAGCTGAAACCTCAGATTCAGTCTGTGCAGATGGCTATTGAAAGACTCCTAGTTTGAgctgatatttttgtttttataaatgatctTTTTGTACAATCCttcagaggttttttttttttttttttttaaagaatcaaatAATGTTGAGTGTGTTTCTCAGCTATTGACTGCCGGAATAAAGTTCGGttgaaatcaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0061053 somite development biological_process
GO:0005730 nucleolus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12845 SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126127 lncRNA downstream 163525 2311243 ~ 2311471 (-) True G85119
TU126123 lncRNA downstream 165963 2306892 ~ 2309033 (-) True G85116
TU126124 lncRNA downstream 165963 2306892 ~ 2309033 (-) False G85116
TU125963 lncRNA downstream 294077 2173988 ~ 2180919 (-) False jmjd1cb
TU125899 lncRNA downstream 473360 2001334 ~ 2001636 (-) True G84956
TU126187 lncRNA upstream 5851 2482247 ~ 2483927 (-) True G85173
TU126188 lncRNA upstream 8798 2485194 ~ 2486204 (-) True G85174
TU126193 lncRNA upstream 29782 2506178 ~ 2507961 (-) True G85177
TU126176 lncRNA upstream 96915 2573311 ~ 2576906 (-) True G85165
TU126235 lncRNA upstream 202326 2678722 ~ 2679291 (-) True G85214
XM_043254337.1 mRNA downstream 1426 2470023 ~ 2473570 (-) True crym
XM_043254370.1 mRNA downstream 72311 2398531 ~ 2402685 (-) True LOC122355817
XM_043253542.1 mRNA downstream 82096 2381934 ~ 2392900 (-) True adam8b
XM_043253540.1 mRNA downstream 95820 2338676 ~ 2379176 (-) False exoc6
XM_043254444.1 mRNA upstream 104662 2581058 ~ 2585819 (-) True psmc5
XM_043254145.1 mRNA upstream 111348 2587744 ~ 2596891 (-) True smarcd2
XM_043254406.1 mRNA upstream 121500 2597896 ~ 2603692 (-) False atxn7l3b
XM_043254407.1 mRNA upstream 121500 2597896 ~ 2603690 (-) False atxn7l3b
XM_043254408.1 mRNA upstream 121500 2597896 ~ 2603690 (-) True atxn7l3b
TU125823 other downstream 527584 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 1577966 891132 ~ 897030 (-) False dlx4b
XR_006252248.1 other downstream 2114684 340273 ~ 360312 (-) False prr12a
unassigned_transcript_1807 other upstream 17314 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 291512 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 614389 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 782135 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 822152 3298548 ~ 3299606 (-) False G85366

Expression Profile